List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092581 | CTT | 4 | 316 | 327 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092581 | GTT | 4 | 894 | 905 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85109282 |
| 3. | NW_001092581 | GTT | 4 | 1506 | 1517 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85109282 |
| 4. | NW_001092581 | ATC | 4 | 1836 | 1847 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109282 |
| 5. | NW_001092581 | AGG | 4 | 3063 | 3074 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109282 |
| 6. | NW_001092581 | TCC | 4 | 3596 | 3606 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 7. | NW_001092581 | CGC | 4 | 4519 | 4529 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85109284 |
| 8. | NW_001092581 | GGT | 4 | 4688 | 4699 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109284 |
| 9. | NW_001092581 | GAC | 4 | 4715 | 4726 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109284 |
| 10. | NW_001092581 | GGC | 6 | 5229 | 5246 | 18 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 11. | NW_001092581 | AGC | 7 | 5283 | 5303 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 12. | NW_001092581 | ACA | 4 | 5710 | 5721 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 13. | NW_001092581 | GAC | 4 | 10269 | 10280 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109288 |
| 14. | NW_001092581 | CGA | 4 | 11399 | 11409 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109288 |
| 15. | NW_001092581 | CTT | 4 | 11847 | 11858 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109288 |
| 16. | NW_001092581 | ACG | 4 | 12304 | 12315 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109288 |
| 17. | NW_001092581 | CTC | 4 | 13731 | 13742 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109290 |
| 18. | NW_001092581 | TGC | 4 | 14501 | 14511 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85109292 |
| 19. | NW_001092581 | TCA | 4 | 14949 | 14960 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109292 |
| 20. | NW_001092581 | TCA | 4 | 15037 | 15047 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85109292 |
| 21. | NW_001092581 | CAT | 4 | 16617 | 16628 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 22. | NW_001092581 | GCC | 4 | 17768 | 17779 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 23. | NW_001092581 | ATC | 4 | 20259 | 20270 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 24. | NW_001092581 | ACC | 4 | 21841 | 21852 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109296 |
| 25. | NW_001092581 | CAC | 5 | 27804 | 27818 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 26. | NW_001092581 | GAG | 4 | 27852 | 27865 | 14 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 27. | NW_001092581 | CGA | 4 | 27913 | 27926 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 28. | NW_001092581 | GCT | 9 | 28182 | 28207 | 26 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 29. | NW_001092581 | GTT | 4 | 28208 | 28219 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 30. | NW_001092581 | GTA | 4 | 28658 | 28668 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 31. | NW_001092581 | CAA | 4 | 28884 | 28895 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 32. | NW_001092581 | AGC | 9 | 29807 | 29833 | 27 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 33. | NW_001092581 | ATG | 4 | 30007 | 30017 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 34. | NW_001092581 | GTC | 4 | 30234 | 30244 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 35. | NW_001092581 | CAT | 4 | 30431 | 30442 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 36. | NW_001092581 | GCA | 5 | 30529 | 30543 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092581 | CTC | 5 | 32106 | 32120 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 38. | NW_001092581 | AGC | 4 | 32469 | 32479 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109302 |
| 39. | NW_001092581 | TCT | 4 | 35460 | 35471 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 40. | NW_001092581 | ACT | 4 | 35477 | 35488 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 41. | NW_001092581 | TCT | 4 | 35496 | 35507 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 42. | NW_001092581 | GCC | 5 | 36837 | 36851 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 43. | NW_001092581 | TGA | 4 | 38038 | 38048 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 44. | NW_001092581 | AGG | 4 | 38159 | 38169 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 45. | NW_001092581 | CCT | 4 | 39717 | 39728 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109304 |
| 46. | NW_001092581 | GCA | 4 | 39846 | 39857 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109304 |
| 47. | NW_001092581 | TGC | 4 | 39860 | 39871 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109304 |
| 48. | NW_001092581 | GGC | 5 | 40097 | 40111 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85109304 |
| 49. | NW_001092581 | CTT | 5 | 40352 | 40366 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85109304 |
| 50. | NW_001092581 | CTT | 4 | 41222 | 41233 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109304 |
| 51. | NW_001092581 | CTT | 4 | 41240 | 41251 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109304 |
| 52. | NW_001092581 | TCT | 4 | 41731 | 41741 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85109304 |
| 53. | NW_001092581 | ATC | 4 | 42734 | 42745 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109304 |
| 54. | NW_001092581 | TTG | 4 | 43217 | 43227 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85109304 |
| 55. | NW_001092581 | TCC | 4 | 43368 | 43379 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109304 |
| 56. | NW_001092581 | GAA | 5 | 44320 | 44333 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 57. | NW_001092581 | TGT | 4 | 45424 | 45435 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 58. | NW_001092581 | AGA | 4 | 46210 | 46221 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 59. | NW_001092581 | GCC | 4 | 48670 | 48681 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109306 |
| 60. | NW_001092581 | GCG | 5 | 49736 | 49750 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85109306 |
| 61. | NW_001092581 | ATG | 4 | 50711 | 50723 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 62. | NW_001092581 | CCT | 4 | 52326 | 52337 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109308 |
| 63. | NW_001092581 | GAG | 8 | 53952 | 53976 | 25 | 33.33% | 0.00% | 66.67% | 0.00% | 85109308 |
| 64. | NW_001092581 | AGA | 4 | 55096 | 55106 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 65. | NW_001092581 | TAC | 4 | 55195 | 55205 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 66. | NW_001092581 | GAC | 4 | 57295 | 57306 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109310 |
| 67. | NW_001092581 | CGA | 4 | 57333 | 57344 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109310 |
| 68. | NW_001092581 | AGG | 5 | 58289 | 58303 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 69. | NW_001092581 | AGA | 8 | 58301 | 58326 | 26 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 70. | NW_001092581 | TTG | 4 | 58512 | 58523 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 71. | NW_001092581 | TCG | 4 | 58582 | 58592 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 72. | NW_001092581 | TAT | 5 | 59027 | 59041 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 73. | NW_001092581 | CTT | 4 | 59188 | 59199 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |