List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092550 | GGT | 5 | 187 | 201 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 2. | NW_001092550 | TGC | 4 | 228 | 239 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 3. | NW_001092550 | CCA | 4 | 1122 | 1133 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 4. | NW_001092550 | TAG | 4 | 1510 | 1521 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 5. | NW_001092550 | GCT | 4 | 3207 | 3219 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85108097 |
| 6. | NW_001092550 | CTG | 5 | 3291 | 3305 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85108097 |
| 7. | NW_001092550 | TGC | 4 | 3307 | 3318 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85108097 |
| 8. | NW_001092550 | GCT | 5 | 3386 | 3399 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85108097 |
| 9. | NW_001092550 | TCT | 5 | 5131 | 5151 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | 85108097 |
| 10. | NW_001092550 | CTT | 4 | 5198 | 5209 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85108097 |
| 11. | NW_001092550 | CCT | 4 | 6412 | 6423 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108097 |
| 12. | NW_001092550 | CCA | 4 | 7779 | 7790 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85108101 |
| 13. | NW_001092550 | GAC | 5 | 9809 | 9822 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 14. | NW_001092550 | ATG | 4 | 10550 | 10561 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85108105 |
| 15. | NW_001092550 | GGT | 4 | 12154 | 12165 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 16. | NW_001092550 | GAG | 4 | 15585 | 15596 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85108109 |
| 17. | NW_001092550 | CAT | 4 | 16387 | 16398 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092550 | CAA | 4 | 16685 | 16696 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 19. | NW_001092550 | ACC | 6 | 17011 | 17028 | 18 | 33.33% | 0.00% | 0.00% | 66.67% | 85108113 |
| 20. | NW_001092550 | AGG | 10 | 17041 | 17071 | 31 | 33.33% | 0.00% | 66.67% | 0.00% | 85108113 |
| 21. | NW_001092550 | TCA | 9 | 17346 | 17372 | 27 | 33.33% | 33.33% | 0.00% | 33.33% | 85108113 |
| 22. | NW_001092550 | GAG | 12 | 17477 | 17512 | 36 | 33.33% | 0.00% | 66.67% | 0.00% | 85108113 |
| 23. | NW_001092550 | CTC | 5 | 18329 | 18343 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85108117 |
| 24. | NW_001092550 | CCG | 9 | 18544 | 18570 | 27 | 0.00% | 0.00% | 33.33% | 66.67% | 85108117 |
| 25. | NW_001092550 | CAC | 4 | 18605 | 18616 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85108117 |
| 26. | NW_001092550 | GTT | 5 | 18935 | 18949 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85108117 |
| 27. | NW_001092550 | GGT | 6 | 19166 | 19183 | 18 | 0.00% | 33.33% | 66.67% | 0.00% | 85108117 |
| 28. | NW_001092550 | TTG | 4 | 23499 | 23510 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85108121 |
| 29. | NW_001092550 | CTT | 4 | 23836 | 23847 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85108121 |
| 30. | NW_001092550 | TGT | 4 | 24457 | 24468 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85108121 |
| 31. | NW_001092550 | CGG | 4 | 24550 | 24561 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85108121 |
| 32. | NW_001092550 | GCC | 4 | 25845 | 25856 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85108124 |
| 33. | NW_001092550 | CGC | 5 | 25875 | 25889 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85108124 |
| 34. | NW_001092550 | CTT | 4 | 25990 | 26001 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85108124 |
| 35. | NW_001092550 | AAG | 4 | 26820 | 26831 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85108124 |
| 36. | NW_001092550 | AGG | 4 | 27112 | 27123 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85108124 |
| 37. | NW_001092550 | GAT | 4 | 27608 | 27618 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 38. | NW_001092550 | TGC | 4 | 28652 | 28662 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 39. | NW_001092550 | AGG | 4 | 30591 | 30601 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 40. | NW_001092550 | GCA | 4 | 32153 | 32165 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 41. | NW_001092550 | CAG | 5 | 32167 | 32180 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 42. | NW_001092550 | CTT | 4 | 33445 | 33455 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 43. | NW_001092550 | CCA | 4 | 36946 | 36957 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85108132 |
| 44. | NW_001092550 | CGC | 4 | 37184 | 37197 | 14 | 0.00% | 0.00% | 33.33% | 66.67% | 85108132 |
| 45. | NW_001092550 | GTT | 4 | 38831 | 38841 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 46. | NW_001092550 | CCT | 4 | 39570 | 39581 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108136 |
| 47. | NW_001092550 | CGC | 4 | 44011 | 44022 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85108144 |
| 48. | NW_001092550 | ACT | 4 | 47798 | 47809 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 49. | NW_001092550 | CAC | 4 | 50328 | 50339 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85108152 |
| 50. | NW_001092550 | AGA | 4 | 54513 | 54524 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85108156 |
| 51. | NW_001092550 | CTC | 4 | 55082 | 55092 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 52. | NW_001092550 | GAA | 4 | 57005 | 57016 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001092550 | AGA | 4 | 57550 | 57560 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 54. | NW_001092550 | GTG | 4 | 57990 | 58001 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 55. | NW_001092550 | TGC | 4 | 64080 | 64091 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 56. | NW_001092550 | CCA | 4 | 64728 | 64739 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 57. | NW_001092550 | CAT | 4 | 65434 | 65446 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092550 | CGA | 4 | 65914 | 65925 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 59. | NW_001092550 | CTG | 4 | 68293 | 68304 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85108169 |
| 60. | NW_001092550 | TTC | 4 | 69912 | 69923 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 61. | NW_001092550 | GTT | 5 | 72382 | 72396 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85108173 |
| 62. | NW_001092550 | CGT | 4 | 76414 | 76425 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85108177 |
| 63. | NW_001092550 | CAC | 4 | 77845 | 77856 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85108181 |
| 64. | NW_001092550 | GCC | 4 | 78208 | 78219 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85108181 |
| 65. | NW_001092550 | GAG | 4 | 78433 | 78444 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85108181 |
| 66. | NW_001092550 | GAG | 4 | 79283 | 79293 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 67. | NW_001092550 | AAC | 4 | 82010 | 82022 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 68. | NW_001092550 | CCG | 4 | 82046 | 82056 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 69. | NW_001092550 | AGA | 4 | 84572 | 84582 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85108189 |
| 70. | NW_001092550 | GTG | 5 | 85841 | 85855 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85108193 |
| 71. | NW_001092550 | TGT | 4 | 86033 | 86044 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 72. | NW_001092550 | CTG | 4 | 87549 | 87559 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 73. | NW_001092550 | CTG | 4 | 88115 | 88126 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85108197 |
| 74. | NW_001092550 | AAC | 4 | 88191 | 88201 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85108197 |
| 75. | NW_001092550 | AGG | 4 | 90655 | 90666 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 76. | NW_001092550 | TCT | 4 | 93106 | 93117 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 77. | NW_001092550 | GAC | 4 | 95276 | 95286 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85108205 |
| 78. | NW_001092550 | CAT | 5 | 96913 | 96927 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85108205 |
| 79. | NW_001092550 | TCC | 4 | 98972 | 98983 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108209 |
| 80. | NW_001092550 | CTG | 4 | 99079 | 99090 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85108209 |
| 81. | NW_001092550 | AGA | 4 | 99206 | 99216 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85108209 |
| 82. | NW_001092550 | AGG | 4 | 99631 | 99642 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85108209 |
| 83. | NW_001092550 | AGA | 7 | 100006 | 100026 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | 85108209 |
| 84. | NW_001092550 | CTC | 4 | 101292 | 101303 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108209 |
| 85. | NW_001092550 | CGC | 4 | 101339 | 101351 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85108209 |
| 86. | NW_001092550 | TCC | 4 | 103186 | 103197 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108214 |
| 87. | NW_001092550 | CAG | 4 | 103271 | 103282 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85108214 |
| 88. | NW_001092550 | GCG | 4 | 103300 | 103311 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85108214 |
| 89. | NW_001092550 | GCG | 4 | 106848 | 106859 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85108218 |
| 90. | NW_001092550 | GGA | 11 | 107036 | 107069 | 34 | 33.33% | 0.00% | 66.67% | 0.00% | 85108218 |
| 91. | NW_001092550 | GAC | 4 | 107262 | 107273 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85108218 |
| 92. | NW_001092550 | GAC | 4 | 108517 | 108528 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 93. | NW_001092550 | TGC | 4 | 110484 | 110495 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 94. | NW_001092550 | AAC | 4 | 116854 | 116865 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 95. | NW_001092550 | TCT | 7 | 117707 | 117727 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 96. | NW_001092550 | TCC | 4 | 120110 | 120121 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 97. | NW_001092550 | CGC | 4 | 120266 | 120277 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85108230 |
| 98. | NW_001092550 | TGG | 4 | 122687 | 122698 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85108230 |
| 99. | NW_001092550 | CGA | 4 | 124195 | 124205 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85108230 |
| 100. | NW_001092550 | CCT | 5 | 126567 | 126584 | 18 | 0.00% | 33.33% | 0.00% | 66.67% | 85108234 |
| 101. | NW_001092550 | GTC | 4 | 126613 | 126624 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85108234 |
| 102. | NW_001092550 | CTC | 4 | 126709 | 126720 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108234 |
| 103. | NW_001092550 | AGA | 4 | 128687 | 128698 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85108238 |
| 104. | NW_001092550 | GAT | 4 | 130235 | 130245 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 105. | NW_001092550 | GGA | 4 | 130473 | 130483 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 106. | NW_001092550 | CAT | 4 | 131889 | 131900 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85108242 |
| 107. | NW_001092550 | GAG | 4 | 133153 | 133164 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85108242 |
| 108. | NW_001092550 | TGG | 4 | 133372 | 133383 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 109. | NW_001092550 | CAT | 4 | 134923 | 134933 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 110. | NW_001092550 | TTG | 4 | 136768 | 136780 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 111. | NW_001092550 | ATA | 4 | 137881 | 137891 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 112. | NW_001092550 | TAC | 4 | 137968 | 137979 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 113. | NW_001092550 | AGG | 4 | 138966 | 138976 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85108250 |
| 114. | NW_001092550 | AGT | 4 | 139023 | 139034 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85108250 |
| 115. | NW_001092550 | AGT | 4 | 139667 | 139678 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 116. | NW_001092550 | ATA | 4 | 140024 | 140035 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 117. | NW_001092550 | TAT | 4 | 140079 | 140089 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 118. | NW_001092550 | TTA | 5 | 140286 | 140300 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 119. | NW_001092550 | CTT | 4 | 140936 | 140947 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 120. | NW_001092550 | TAT | 5 | 141291 | 141305 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 121. | NW_001092550 | AGA | 7 | 142934 | 142954 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 122. | NW_001092550 | TGC | 4 | 143304 | 143314 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85108257 |
| 123. | NW_001092550 | CTC | 4 | 143375 | 143385 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85108257 |
| 124. | NW_001092550 | TCT | 4 | 143571 | 143582 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85108257 |
| 125. | NW_001092550 | CAA | 4 | 144715 | 144726 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85108261 |
| 126. | NW_001092550 | ACG | 4 | 148700 | 148711 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85108265 |
| 127. | NW_001092550 | TAT | 4 | 151241 | 151252 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 128. | NW_001092550 | TAA | 7 | 151282 | 151305 | 24 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 129. | NW_001092550 | AGA | 4 | 151643 | 151654 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 130. | NW_001092550 | TAA | 4 | 152384 | 152396 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 131. | NW_001092550 | TTA | 4 | 152926 | 152937 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 132. | NW_001092550 | TAA | 4 | 153517 | 153528 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 133. | NW_001092550 | AAT | 4 | 154578 | 154589 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 134. | NW_001092550 | ATA | 4 | 155042 | 155053 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 135. | NW_001092550 | ATT | 4 | 155969 | 155981 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 136. | NW_001092550 | TAA | 4 | 156589 | 156600 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |