List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092550 | CCGA | 3 | 1535 | 1546 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 2. | NW_001092550 | TGTA | 4 | 2199 | 2214 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 3. | NW_001092550 | GTTC | 3 | 6945 | 6957 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 4. | NW_001092550 | TACC | 4 | 7154 | 7169 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 5. | NW_001092550 | TAGA | 3 | 7309 | 7320 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 6. | NW_001092550 | GGGC | 3 | 10908 | 10919 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | 85108105 |
| 7. | NW_001092550 | TGTC | 3 | 11192 | 11202 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85108105 |
| 8. | NW_001092550 | CCGA | 4 | 12448 | 12463 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 9. | NW_001092550 | CATC | 3 | 12915 | 12926 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 10. | NW_001092550 | AATC | 4 | 13102 | 13117 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 11. | NW_001092550 | CTGG | 3 | 13834 | 13844 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85108109 |
| 12. | NW_001092550 | AGTC | 3 | 23361 | 23371 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 13. | NW_001092550 | CTCC | 3 | 25150 | 25161 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 14. | NW_001092550 | TACC | 3 | 25912 | 25922 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85108124 |
| 15. | NW_001092550 | GCTC | 3 | 28518 | 28528 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 16. | NW_001092550 | AATG | 3 | 29048 | 29059 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 17. | NW_001092550 | ACCA | 3 | 30351 | 30361 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | 85108128 |
| 18. | NW_001092550 | GTAT | 3 | 30669 | 30681 | 13 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 19. | NW_001092550 | GATG | 3 | 32209 | 32220 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 20. | NW_001092550 | AGGT | 3 | 34545 | 34555 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 21. | NW_001092550 | GGAC | 3 | 34733 | 34744 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 22. | NW_001092550 | CGAT | 3 | 35352 | 35363 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85108132 |
| 23. | NW_001092550 | TGGA | 3 | 38113 | 38124 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 24. | NW_001092550 | CCCA | 3 | 40650 | 40660 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 25. | NW_001092550 | ATTC | 3 | 40963 | 40973 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 26. | NW_001092550 | GGCT | 3 | 44641 | 44651 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85108144 |
| 27. | NW_001092550 | AGCA | 3 | 44742 | 44752 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85108144 |
| 28. | NW_001092550 | TGCC | 3 | 49719 | 49730 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85108152 |
| 29. | NW_001092550 | GCAA | 3 | 50707 | 50718 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85108152 |
| 30. | NW_001092550 | GGCC | 3 | 52613 | 52624 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | 85108152 |
| 31. | NW_001092550 | GGAA | 4 | 54748 | 54762 | 15 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 32. | NW_001092550 | TGGG | 3 | 59447 | 59458 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 33. | NW_001092550 | ATGG | 3 | 63406 | 63417 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 34. | NW_001092550 | GGCA | 3 | 63996 | 64007 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 35. | NW_001092550 | CAGG | 3 | 66931 | 66943 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | 85108169 |
| 36. | NW_001092550 | ACAA | 3 | 67422 | 67432 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | 85108169 |
| 37. | NW_001092550 | TACA | 3 | 70112 | 70123 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 38. | NW_001092550 | ATGG | 3 | 70178 | 70189 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 39. | NW_001092550 | AAGG | 3 | 72240 | 72250 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 40. | NW_001092550 | GAAA | 3 | 72521 | 72531 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | 85108173 |
| 41. | NW_001092550 | AAAC | 3 | 78814 | 78826 | 13 | 75.00% | 0.00% | 0.00% | 25.00% | 85108181 |
| 42. | NW_001092550 | AACA | 4 | 79684 | 79699 | 16 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 43. | NW_001092550 | CGTG | 3 | 82289 | 82299 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85108189 |
| 44. | NW_001092550 | GTCC | 3 | 82955 | 82967 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | 85108189 |
| 45. | NW_001092550 | CCTT | 3 | 85286 | 85296 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | 85108193 |
| 46. | NW_001092550 | GTAT | 3 | 86513 | 86524 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 47. | NW_001092550 | CGAA | 3 | 87488 | 87499 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 48. | NW_001092550 | CTTC | 3 | 90887 | 90898 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 49. | NW_001092550 | GGTG | 3 | 92386 | 92396 | 11 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 50. | NW_001092550 | GTAG | 4 | 92839 | 92854 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 51. | NW_001092550 | ATAC | 3 | 92997 | 93008 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 52. | NW_001092550 | AGGC | 3 | 97252 | 97262 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85108205 |
| 53. | NW_001092550 | GCCC | 3 | 97469 | 97479 | 11 | 0.00% | 0.00% | 25.00% | 75.00% | 85108205 |
| 54. | NW_001092550 | AAGC | 3 | 98808 | 98818 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85108209 |
| 55. | NW_001092550 | TCCA | 3 | 102480 | 102491 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 56. | NW_001092550 | CCAA | 3 | 102560 | 102572 | 13 | 50.00% | 0.00% | 0.00% | 50.00% | 85108214 |
| 57. | NW_001092550 | TGAG | 3 | 110344 | 110354 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 58. | NW_001092550 | AAGC | 3 | 115801 | 115811 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 59. | NW_001092550 | GACG | 5 | 116722 | 116741 | 20 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 60. | NW_001092550 | CAGT | 3 | 116755 | 116766 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 61. | NW_001092550 | TAGA | 3 | 117186 | 117196 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 62. | NW_001092550 | TCTT | 3 | 117197 | 117208 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 63. | NW_001092550 | AACC | 3 | 117515 | 117526 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 64. | NW_001092550 | TACC | 3 | 117587 | 117602 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 65. | NW_001092550 | TTGC | 3 | 123205 | 123215 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85108230 |
| 66. | NW_001092550 | CTTT | 3 | 123331 | 123342 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85108230 |
| 67. | NW_001092550 | TTCT | 3 | 123466 | 123478 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | 85108230 |
| 68. | NW_001092550 | GTGG | 3 | 129886 | 129897 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 69. | NW_001092550 | TCCT | 3 | 131293 | 131304 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 70. | NW_001092550 | TTTA | 3 | 133287 | 133298 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 71. | NW_001092550 | GATA | 3 | 134953 | 134964 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 72. | NW_001092550 | GTAA | 3 | 135132 | 135142 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 73. | NW_001092550 | CCGG | 3 | 136964 | 136975 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 74. | NW_001092550 | TAAT | 3 | 139285 | 139295 | 11 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 75. | NW_001092550 | ACTG | 3 | 146915 | 146926 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 76. | NW_001092550 | CTTC | 3 | 150708 | 150719 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85108265 |
| 77. | NW_001092550 | TTAC | 3 | 153110 | 153121 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 78. | NW_001092550 | TTAA | 3 | 153450 | 153462 | 13 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 79. | NW_001092550 | ATAA | 3 | 153844 | 153855 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 80. | NW_001092550 | TTTA | 3 | 153906 | 153917 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 81. | NW_001092550 | CTTT | 3 | 154401 | 154413 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 82. | NW_001092550 | ATTA | 3 | 154493 | 154504 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 83. | NW_001092550 | ACCT | 3 | 154916 | 154926 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |