List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092548 | CAC | 4 | 1921 | 1932 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 2. | NW_001092548 | CCG | 4 | 2886 | 2897 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107660 |
| 3. | NW_001092548 | TCT | 4 | 3483 | 3496 | 14 | 0.00% | 66.67% | 0.00% | 33.33% | 85107660 |
| 4. | NW_001092548 | AGT | 4 | 4331 | 4341 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107664 |
| 5. | NW_001092548 | AAG | 4 | 8848 | 8858 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85107671 |
| 6. | NW_001092548 | GCC | 4 | 9129 | 9140 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107671 |
| 7. | NW_001092548 | CCG | 4 | 9504 | 9515 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107671 |
| 8. | NW_001092548 | ATC | 4 | 9992 | 10002 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85107671 |
| 9. | NW_001092548 | GAT | 4 | 11684 | 11695 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85107675 |
| 10. | NW_001092548 | GAA | 4 | 13225 | 13236 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 11. | NW_001092548 | CGG | 4 | 13469 | 13480 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 12. | NW_001092548 | CAG | 4 | 13872 | 13883 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 13. | NW_001092548 | TCG | 7 | 13896 | 13919 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 14. | NW_001092548 | CCA | 4 | 13942 | 13953 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107679 |
| 15. | NW_001092548 | GCC | 4 | 14013 | 14024 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107679 |
| 16. | NW_001092548 | ACC | 4 | 14049 | 14060 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107679 |
| 17. | NW_001092548 | CCA | 5 | 14074 | 14088 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85107679 |
| 18. | NW_001092548 | CCG | 5 | 14101 | 14114 | 14 | 0.00% | 0.00% | 33.33% | 66.67% | 85107679 |
| 19. | NW_001092548 | CAC | 5 | 14171 | 14185 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85107679 |
| 20. | NW_001092548 | CCA | 4 | 15044 | 15054 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85107679 |
| 21. | NW_001092548 | ACA | 4 | 16632 | 16643 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 22. | NW_001092548 | TCA | 4 | 17414 | 17425 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85107683 |
| 23. | NW_001092548 | CTT | 5 | 20498 | 20512 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85107687 |
| 24. | NW_001092548 | CGA | 4 | 25090 | 25100 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 25. | NW_001092548 | CCA | 4 | 27665 | 27676 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 26. | NW_001092548 | AGA | 4 | 27961 | 27972 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 27. | NW_001092548 | ATG | 4 | 28051 | 28062 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 28. | NW_001092548 | CAA | 5 | 28187 | 28201 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 29. | NW_001092548 | CCT | 5 | 28355 | 28369 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85107702 |
| 30. | NW_001092548 | GTT | 4 | 28930 | 28943 | 14 | 0.00% | 66.67% | 33.33% | 0.00% | 85107702 |
| 31. | NW_001092548 | GCC | 4 | 28996 | 29007 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107702 |
| 32. | NW_001092548 | TTG | 4 | 29015 | 29026 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85107702 |
| 33. | NW_001092548 | GCT | 4 | 30820 | 30830 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85107702 |
| 34. | NW_001092548 | GGC | 5 | 31290 | 31304 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85107702 |
| 35. | NW_001092548 | TGC | 4 | 31531 | 31542 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107702 |
| 36. | NW_001092548 | GAC | 4 | 31576 | 31587 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092548 | GTG | 4 | 31763 | 31774 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 38. | NW_001092548 | AGT | 4 | 34271 | 34282 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 39. | NW_001092548 | CAT | 4 | 35005 | 35017 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 40. | NW_001092548 | CTC | 4 | 35225 | 35237 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85107706 |
| 41. | NW_001092548 | CAC | 4 | 35329 | 35340 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107706 |
| 42. | NW_001092548 | CCG | 4 | 38014 | 38025 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107710 |
| 43. | NW_001092548 | GTA | 4 | 38372 | 38382 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107710 |
| 44. | NW_001092548 | GGA | 4 | 38767 | 38778 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107710 |
| 45. | NW_001092548 | GCG | 4 | 39228 | 39239 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85107710 |
| 46. | NW_001092548 | TAG | 4 | 41092 | 41102 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 47. | NW_001092548 | ATC | 4 | 42453 | 42464 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 48. | NW_001092548 | GGA | 4 | 42693 | 42704 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107718 |
| 49. | NW_001092548 | GAC | 5 | 43038 | 43051 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | 85107718 |
| 50. | NW_001092548 | CTC | 5 | 43177 | 43191 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85107718 |
| 51. | NW_001092548 | CTC | 4 | 44910 | 44920 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85107722 |
| 52. | NW_001092548 | TCA | 4 | 49479 | 49490 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85107730 |
| 53. | NW_001092548 | CAC | 4 | 49520 | 49531 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107730 |
| 54. | NW_001092548 | GGA | 4 | 50545 | 50556 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107730 |
| 55. | NW_001092548 | CGA | 4 | 50626 | 50637 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107730 |
| 56. | NW_001092548 | CTC | 4 | 52339 | 52349 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 57. | NW_001092548 | ACC | 4 | 53445 | 53456 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107734 |
| 58. | NW_001092548 | CTC | 4 | 53491 | 53505 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85107734 |
| 59. | NW_001092548 | CTC | 4 | 53575 | 53587 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85107734 |
| 60. | NW_001092548 | CTT | 4 | 53799 | 53810 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85107734 |
| 61. | NW_001092548 | TTC | 5 | 55882 | 55896 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85107738 |
| 62. | NW_001092548 | TGT | 8 | 55996 | 56018 | 23 | 0.00% | 66.67% | 33.33% | 0.00% | 85107738 |
| 63. | NW_001092548 | GAG | 4 | 56490 | 56501 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107738 |
| 64. | NW_001092548 | GAG | 7 | 57423 | 57443 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | 85107738 |
| 65. | NW_001092548 | TGC | 4 | 59757 | 59768 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107742 |
| 66. | NW_001092548 | CTT | 4 | 64602 | 64613 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85107750 |
| 67. | NW_001092548 | GAG | 5 | 73211 | 73225 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85107753 |
| 68. | NW_001092548 | AAG | 5 | 73295 | 73309 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85107753 |
| 69. | NW_001092548 | GAC | 4 | 73414 | 73425 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107753 |
| 70. | NW_001092548 | CTC | 7 | 74390 | 74411 | 22 | 0.00% | 33.33% | 0.00% | 66.67% | 85107757 |
| 71. | NW_001092548 | ACC | 4 | 74468 | 74479 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107757 |
| 72. | NW_001092548 | AGC | 7 | 74477 | 74497 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85107757 |
| 73. | NW_001092548 | CGG | 4 | 74731 | 74742 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85107757 |
| 74. | NW_001092548 | CGC | 4 | 74872 | 74883 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107757 |
| 75. | NW_001092548 | CGA | 4 | 78395 | 78405 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85107761 |
| 76. | NW_001092548 | TGA | 4 | 78863 | 78874 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85107761 |
| 77. | NW_001092548 | GAA | 7 | 81276 | 81296 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | 85107761 |
| 78. | NW_001092548 | GAT | 8 | 81580 | 81603 | 24 | 33.33% | 33.33% | 33.33% | 0.00% | 85107761 |
| 79. | NW_001092548 | TGG | 7 | 81681 | 81701 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85107761 |
| 80. | NW_001092548 | GCT | 9 | 81697 | 81723 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85107761 |
| 81. | NW_001092548 | CTT | 4 | 81779 | 81790 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85107761 |
| 82. | NW_001092548 | AGA | 4 | 82054 | 82065 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107761 |
| 83. | NW_001092548 | CAC | 5 | 82090 | 82104 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85107761 |
| 84. | NW_001092548 | TCT | 5 | 82135 | 82149 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85107761 |
| 85. | NW_001092548 | TGG | 8 | 82749 | 82772 | 24 | 0.00% | 33.33% | 66.67% | 0.00% | 85107761 |
| 86. | NW_001092548 | CTG | 4 | 84152 | 84164 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85107765 |
| 87. | NW_001092548 | CAC | 4 | 85691 | 85703 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 88. | NW_001092548 | GAT | 4 | 88762 | 88772 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 89. | NW_001092548 | CTC | 5 | 89596 | 89610 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85107774 |
| 90. | NW_001092548 | CGT | 4 | 93567 | 93579 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85107781 |
| 91. | NW_001092548 | CGC | 4 | 93836 | 93847 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107781 |
| 92. | NW_001092548 | GTG | 4 | 94812 | 94823 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 93. | NW_001092548 | CGC | 4 | 96523 | 96534 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107784 |
| 94. | NW_001092548 | ACG | 4 | 99054 | 99066 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 95. | NW_001092548 | CCT | 6 | 99639 | 99657 | 19 | 0.00% | 33.33% | 0.00% | 66.67% | 85107788 |
| 96. | NW_001092548 | GAA | 4 | 99944 | 99955 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107788 |
| 97. | NW_001092548 | AGG | 6 | 100128 | 100146 | 19 | 33.33% | 0.00% | 66.67% | 0.00% | 85107788 |
| 98. | NW_001092548 | GAG | 7 | 100305 | 100325 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | 85107788 |
| 99. | NW_001092548 | AAC | 4 | 100404 | 100414 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85107788 |
| 100. | NW_001092548 | TCA | 4 | 100475 | 100486 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85107788 |
| 101. | NW_001092548 | ATG | 4 | 102514 | 102524 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107791 |
| 102. | NW_001092548 | CTG | 7 | 102598 | 102618 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85107791 |
| 103. | NW_001092548 | GAG | 11 | 103909 | 103941 | 33 | 33.33% | 0.00% | 66.67% | 0.00% | 85107795 |
| 104. | NW_001092548 | TGG | 4 | 104545 | 104556 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85107795 |
| 105. | NW_001092548 | GGT | 4 | 105336 | 105346 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 106. | NW_001092548 | TCG | 4 | 106491 | 106502 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 107. | NW_001092548 | TCC | 4 | 107556 | 107567 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 108. | NW_001092548 | TAC | 4 | 107896 | 107908 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 109. | NW_001092548 | GAG | 4 | 112799 | 112809 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85107799 |
| 110. | NW_001092548 | TCA | 4 | 113901 | 113911 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 111. | NW_001092548 | TCT | 4 | 116242 | 116252 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 112. | NW_001092548 | ACA | 8 | 116548 | 116571 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 113. | NW_001092548 | CAC | 4 | 118193 | 118205 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85107807 |
| 114. | NW_001092548 | AGA | 4 | 118447 | 118458 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107807 |
| 115. | NW_001092548 | CAG | 4 | 119784 | 119795 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 116. | NW_001092548 | ACG | 4 | 119878 | 119889 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 117. | NW_001092548 | ATC | 9 | 120183 | 120209 | 27 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 118. | NW_001092548 | CAC | 9 | 123159 | 123184 | 26 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 119. | NW_001092548 | ACA | 4 | 123278 | 123290 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 120. | NW_001092548 | GAA | 7 | 123293 | 123313 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 121. | NW_001092548 | AAC | 5 | 124415 | 124429 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85107816 |
| 122. | NW_001092548 | CCT | 9 | 124878 | 124903 | 26 | 0.00% | 33.33% | 0.00% | 66.67% | 85107816 |
| 123. | NW_001092548 | TCT | 5 | 124921 | 124935 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85107816 |
| 124. | NW_001092548 | CCT | 5 | 124933 | 124947 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85107816 |
| 125. | NW_001092548 | CTA | 4 | 126528 | 126538 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 126. | NW_001092548 | GCA | 4 | 127084 | 127096 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 127. | NW_001092548 | CAT | 4 | 128806 | 128817 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 128. | NW_001092548 | GCC | 4 | 128914 | 128925 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 129. | NW_001092548 | TGG | 4 | 133741 | 133753 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85107829 |
| 130. | NW_001092548 | TGC | 4 | 137691 | 137702 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107833 |
| 131. | NW_001092548 | GAA | 5 | 137848 | 137862 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85107833 |
| 132. | NW_001092548 | CGA | 5 | 137871 | 137885 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85107833 |
| 133. | NW_001092548 | AAT | 4 | 142241 | 142251 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 134. | NW_001092548 | GTT | 4 | 143129 | 143140 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 135. | NW_001092548 | TCT | 4 | 146982 | 146992 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85107849 |
| 136. | NW_001092548 | CCA | 4 | 148607 | 148618 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107849 |