List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092548 | CGCA | 3 | 1674 | 1684 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 2. | NW_001092548 | TCTT | 3 | 1965 | 1975 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 3. | NW_001092548 | CTCC | 3 | 2758 | 2769 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85107660 |
| 4. | NW_001092548 | GGGA | 3 | 3044 | 3055 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85107660 |
| 5. | NW_001092548 | TTTC | 3 | 3117 | 3128 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85107660 |
| 6. | NW_001092548 | GCTC | 3 | 3141 | 3153 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | 85107660 |
| 7. | NW_001092548 | CCTG | 3 | 5283 | 5294 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85107664 |
| 8. | NW_001092548 | GTAT | 3 | 7824 | 7835 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 9. | NW_001092548 | ACCT | 3 | 9859 | 9870 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85107671 |
| 10. | NW_001092548 | GTTC | 3 | 13257 | 13267 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 11. | NW_001092548 | CCTT | 3 | 27819 | 27830 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 12. | NW_001092548 | TTGG | 3 | 31217 | 31228 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 85107702 |
| 13. | NW_001092548 | AGGT | 6 | 32186 | 32209 | 24 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 14. | NW_001092548 | CTAC | 3 | 34072 | 34083 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 15. | NW_001092548 | CTTA | 3 | 34125 | 34136 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 16. | NW_001092548 | AAGA | 3 | 40373 | 40383 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 17. | NW_001092548 | CAAA | 3 | 42432 | 42442 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 18. | NW_001092548 | TCCT | 6 | 43119 | 43141 | 23 | 0.00% | 50.00% | 0.00% | 50.00% | 85107718 |
| 19. | NW_001092548 | TCCC | 3 | 43154 | 43165 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85107718 |
| 20. | NW_001092548 | CACC | 4 | 45269 | 45284 | 16 | 25.00% | 0.00% | 0.00% | 75.00% | 85107722 |
| 21. | NW_001092548 | GGAA | 3 | 46594 | 46605 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 22. | NW_001092548 | TCCC | 3 | 52228 | 52240 | 13 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 23. | NW_001092548 | CGAC | 3 | 53712 | 53722 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | 85107734 |
| 24. | NW_001092548 | GGGT | 3 | 54135 | 54146 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85107734 |
| 25. | NW_001092548 | AACT | 3 | 54766 | 54776 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 26. | NW_001092548 | CTTC | 3 | 55308 | 55319 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 27. | NW_001092548 | GGAG | 3 | 56589 | 56599 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85107738 |
| 28. | NW_001092548 | CTTG | 3 | 57578 | 57589 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85107738 |
| 29. | NW_001092548 | GCCA | 5 | 57978 | 57997 | 20 | 25.00% | 0.00% | 25.00% | 50.00% | 85107738 |
| 30. | NW_001092548 | TCTT | 4 | 63531 | 63547 | 17 | 0.00% | 75.00% | 0.00% | 25.00% | 85107746 |
| 31. | NW_001092548 | CTTT | 3 | 63558 | 63569 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85107746 |
| 32. | NW_001092548 | TGGC | 5 | 63654 | 63673 | 20 | 0.00% | 25.00% | 50.00% | 25.00% | 85107746 |
| 33. | NW_001092548 | TGGA | 4 | 65028 | 65043 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 34. | NW_001092548 | TACA | 3 | 66045 | 66057 | 13 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 35. | NW_001092548 | CCTT | 3 | 67038 | 67048 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 36. | NW_001092548 | TGTT | 3 | 68278 | 68289 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 37. | NW_001092548 | TAGA | 3 | 73771 | 73781 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 38. | NW_001092548 | CTTT | 3 | 73882 | 73892 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 39. | NW_001092548 | TGTA | 5 | 88836 | 88856 | 21 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 40. | NW_001092548 | TACA | 3 | 89178 | 89189 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | 85107774 |
| 41. | NW_001092548 | CTTA | 9 | 89563 | 89598 | 36 | 25.00% | 50.00% | 0.00% | 25.00% | 85107774 |
| 42. | NW_001092548 | GCCT | 3 | 89740 | 89750 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85107774 |
| 43. | NW_001092548 | GGGA | 3 | 90251 | 90262 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85107774 |
| 44. | NW_001092548 | CCGC | 3 | 93229 | 93240 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 45. | NW_001092548 | TCAG | 5 | 95928 | 95947 | 20 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 46. | NW_001092548 | CTTT | 3 | 100261 | 100272 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85107788 |
| 47. | NW_001092548 | TCGC | 4 | 103116 | 103130 | 15 | 0.00% | 25.00% | 25.00% | 50.00% | 85107791 |
| 48. | NW_001092548 | CAGG | 3 | 103258 | 103269 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85107791 |
| 49. | NW_001092548 | AAGC | 3 | 103485 | 103496 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85107791 |
| 50. | NW_001092548 | CGAA | 4 | 103500 | 103515 | 16 | 50.00% | 0.00% | 25.00% | 25.00% | 85107791 |
| 51. | NW_001092548 | ACAG | 3 | 105550 | 105561 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 52. | NW_001092548 | TGTA | 3 | 105641 | 105653 | 13 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 53. | NW_001092548 | TCCT | 4 | 106745 | 106760 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092548 | CTAC | 4 | 107321 | 107337 | 17 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 55. | NW_001092548 | AGGA | 3 | 108030 | 108041 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 56. | NW_001092548 | GGTT | 4 | 108112 | 108127 | 16 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 57. | NW_001092548 | TCCC | 3 | 111047 | 111059 | 13 | 0.00% | 25.00% | 0.00% | 75.00% | 85107799 |
| 58. | NW_001092548 | CGAG | 3 | 112578 | 112588 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85107799 |
| 59. | NW_001092548 | CTTC | 4 | 113994 | 114009 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 60. | NW_001092548 | TGGC | 3 | 114047 | 114058 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 61. | NW_001092548 | AACC | 3 | 114445 | 114455 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 62. | NW_001092548 | CATG | 3 | 118112 | 118124 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | 85107807 |
| 63. | NW_001092548 | CCTC | 3 | 121131 | 121142 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85107811 |
| 64. | NW_001092548 | GGTG | 3 | 121707 | 121718 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85107811 |
| 65. | NW_001092548 | TGGG | 3 | 122735 | 122746 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 66. | NW_001092548 | CCAT | 3 | 124007 | 124017 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85107816 |
| 67. | NW_001092548 | GTCC | 3 | 137529 | 137539 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85107833 |
| 68. | NW_001092548 | GGGT | 3 | 137630 | 137640 | 11 | 0.00% | 25.00% | 75.00% | 0.00% | 85107833 |
| 69. | NW_001092548 | TGGC | 3 | 138274 | 138284 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 70. | NW_001092548 | CACC | 3 | 141375 | 141385 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 71. | NW_001092548 | ATCG | 3 | 144683 | 144693 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85107845 |
| 72. | NW_001092548 | GTGG | 3 | 144876 | 144888 | 13 | 0.00% | 25.00% | 75.00% | 0.00% | 85107845 |
| 73. | NW_001092548 | ACTG | 3 | 147177 | 147189 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | 85107849 |
| 74. | NW_001092548 | TACA | 6 | 149445 | 149468 | 24 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 75. | NW_001092548 | TAGG | 3 | 149594 | 149605 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 76. | NW_001092548 | TTTA | 5 | 149800 | 149818 | 19 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |