List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092547 | CGAC | 3 | 12955 | 12965 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | 85107444 |
| 2. | NW_001092547 | GGGA | 8 | 14399 | 14431 | 33 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 3. | NW_001092547 | TGGA | 3 | 14537 | 14547 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 4. | NW_001092547 | ACGC | 4 | 22614 | 22629 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 5. | NW_001092547 | GTAG | 4 | 22918 | 22933 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 6. | NW_001092547 | CATC | 3 | 24669 | 24679 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85107452 |
| 7. | NW_001092547 | CGAG | 3 | 25053 | 25063 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85107452 |
| 8. | NW_001092547 | GCTT | 3 | 25064 | 25074 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85107452 |
| 9. | NW_001092547 | TGCA | 3 | 28924 | 28935 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 10. | NW_001092547 | ATCC | 3 | 38110 | 38120 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 11. | NW_001092547 | CCAC | 4 | 39528 | 39544 | 17 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 12. | NW_001092547 | CCAC | 3 | 39893 | 39904 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 13. | NW_001092547 | GGAA | 3 | 40739 | 40750 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 85107464 |
| 14. | NW_001092547 | TCTT | 3 | 41333 | 41344 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 15. | NW_001092547 | GGAA | 3 | 46222 | 46232 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | 85107472 |
| 16. | NW_001092547 | ATGG | 3 | 48528 | 48539 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85107476 |
| 17. | NW_001092547 | CACG | 3 | 48572 | 48583 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85107476 |
| 18. | NW_001092547 | AGGC | 3 | 50754 | 50766 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | 85107481 |
| 19. | NW_001092547 | GGTA | 3 | 50879 | 50890 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85107481 |
| 20. | NW_001092547 | TGCT | 6 | 51236 | 51259 | 24 | 0.00% | 50.00% | 25.00% | 25.00% | 85107481 |
| 21. | NW_001092547 | GCTA | 3 | 51586 | 51596 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 22. | NW_001092547 | GTAT | 3 | 56082 | 56093 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 23. | NW_001092547 | TTCC | 3 | 57660 | 57670 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 24. | NW_001092547 | AAGC | 3 | 57996 | 58006 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85107492 |
| 25. | NW_001092547 | GAGT | 3 | 60857 | 60867 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85107496 |
| 26. | NW_001092547 | TATG | 3 | 61482 | 61493 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 27. | NW_001092547 | CAAC | 3 | 61514 | 61525 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 28. | NW_001092547 | GTTG | 3 | 61550 | 61561 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 29. | NW_001092547 | GAAA | 3 | 61678 | 61689 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 30. | NW_001092547 | CCTG | 3 | 65543 | 65554 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85107500 |
| 31. | NW_001092547 | CCTG | 5 | 66270 | 66289 | 20 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 32. | NW_001092547 | GCTC | 3 | 67536 | 67546 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 33. | NW_001092547 | CGGT | 3 | 68598 | 68609 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 34. | NW_001092547 | AAAT | 3 | 72515 | 72526 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 35. | NW_001092547 | AAAC | 3 | 82934 | 82944 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 36. | NW_001092547 | TCAT | 4 | 83178 | 83193 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 37. | NW_001092547 | CGGC | 3 | 84026 | 84038 | 13 | 0.00% | 0.00% | 50.00% | 50.00% | 85107531 |
| 38. | NW_001092547 | GGAC | 3 | 84150 | 84162 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | 85107531 |
| 39. | NW_001092547 | GATG | 3 | 86980 | 86990 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85107535 |
| 40. | NW_001092547 | CCAG | 3 | 88047 | 88057 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 41. | NW_001092547 | TTCG | 3 | 90442 | 90452 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85107539 |
| 42. | NW_001092547 | CGAG | 3 | 91164 | 91174 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85107539 |
| 43. | NW_001092547 | CGGG | 3 | 95087 | 95098 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 44. | NW_001092547 | GGCT | 4 | 95153 | 95169 | 17 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 45. | NW_001092547 | CCTA | 3 | 95212 | 95223 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 46. | NW_001092547 | CTGG | 3 | 98093 | 98103 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85107543 |
| 47. | NW_001092547 | GAAA | 3 | 98598 | 98609 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 85107543 |
| 48. | NW_001092547 | CAGG | 3 | 98731 | 98742 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85107543 |
| 49. | NW_001092547 | GCAA | 3 | 102928 | 102940 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 50. | NW_001092547 | TCAA | 3 | 105745 | 105757 | 13 | 50.00% | 25.00% | 0.00% | 25.00% | 85107552 |
| 51. | NW_001092547 | CAGA | 3 | 105974 | 105984 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85107552 |
| 52. | NW_001092547 | CTTG | 3 | 107486 | 107496 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 53. | NW_001092547 | CCTA | 3 | 108815 | 108826 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092547 | TTCG | 3 | 113067 | 113077 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 55. | NW_001092547 | GCAG | 4 | 116108 | 116123 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 56. | NW_001092547 | GGAA | 3 | 119305 | 119317 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 57. | NW_001092547 | TGCT | 3 | 129473 | 129483 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 58. | NW_001092547 | TCCC | 3 | 130055 | 130065 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 59. | NW_001092547 | CCTC | 3 | 130492 | 130504 | 13 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 60. | NW_001092547 | CTTT | 3 | 132976 | 132986 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 61. | NW_001092547 | ACCC | 3 | 133965 | 133976 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | 85107595 |
| 62. | NW_001092547 | GGCT | 3 | 136773 | 136784 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85107599 |
| 63. | NW_001092547 | GCTA | 3 | 137980 | 137992 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 64. | NW_001092547 | ATTA | 4 | 140694 | 140710 | 17 | 50.00% | 50.00% | 0.00% | 0.00% | 85107603 |
| 65. | NW_001092547 | ATTA | 3 | 141231 | 141243 | 13 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 66. | NW_001092547 | TTAA | 3 | 142336 | 142346 | 11 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 67. | NW_001092547 | CGAA | 3 | 143097 | 143108 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85107607 |
| 68. | NW_001092547 | TTTA | 3 | 143133 | 143144 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | 85107607 |
| 69. | NW_001092547 | AAGT | 3 | 143467 | 143478 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 70. | NW_001092547 | TAAT | 5 | 143558 | 143578 | 21 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 71. | NW_001092547 | TAAT | 3 | 143679 | 143691 | 13 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 72. | NW_001092547 | TTTA | 3 | 144239 | 144250 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 73. | NW_001092547 | TTAT | 3 | 144362 | 144373 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 74. | NW_001092547 | TTTA | 3 | 145247 | 145258 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 75. | NW_001092547 | TTAT | 3 | 147151 | 147162 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 76. | NW_001092547 | TTAA | 3 | 147713 | 147724 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 77. | NW_001092547 | TAAT | 3 | 148008 | 148019 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |