List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092545 | TAA | 4 | 636 | 648 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092545 | ATA | 4 | 1053 | 1064 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092545 | CTA | 4 | 1767 | 1777 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 4. | NW_001092545 | TTA | 4 | 2220 | 2230 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092545 | TAT | 4 | 3051 | 3062 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092545 | TAT | 4 | 3089 | 3100 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 7. | NW_001092545 | GTA | 4 | 3146 | 3156 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 8. | NW_001092545 | TAT | 7 | 5526 | 5546 | 21 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 9. | NW_001092545 | CCT | 4 | 5579 | 5589 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 10. | NW_001092545 | TAC | 4 | 5595 | 5606 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 11. | NW_001092545 | TTA | 4 | 6206 | 6217 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 12. | NW_001092545 | TAA | 5 | 6510 | 6525 | 16 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 13. | NW_001092545 | TAT | 4 | 6666 | 6677 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 14. | NW_001092545 | TTA | 4 | 6755 | 6766 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 15. | NW_001092545 | GAG | 4 | 9377 | 9388 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107083 |
| 16. | NW_001092545 | CAA | 4 | 11277 | 11287 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85107087 |
| 17. | NW_001092545 | CAA | 4 | 11503 | 11514 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85107087 |
| 18. | NW_001092545 | TCC | 4 | 16446 | 16456 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85107094 |
| 19. | NW_001092545 | TGC | 4 | 16701 | 16712 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107094 |
| 20. | NW_001092545 | CTC | 4 | 22595 | 22606 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 21. | NW_001092545 | CAC | 4 | 22692 | 22703 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 22. | NW_001092545 | TCT | 5 | 23771 | 23785 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85107106 |
| 23. | NW_001092545 | TTC | 4 | 24070 | 24080 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85107106 |
| 24. | NW_001092545 | CAT | 4 | 24403 | 24413 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85107106 |
| 25. | NW_001092545 | TCT | 4 | 24916 | 24926 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85107106 |
| 26. | NW_001092545 | ACC | 4 | 26923 | 26934 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 27. | NW_001092545 | GGT | 8 | 35963 | 35986 | 24 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 28. | NW_001092545 | TCC | 4 | 37507 | 37519 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 29. | NW_001092545 | TCA | 6 | 39067 | 39084 | 18 | 33.33% | 33.33% | 0.00% | 33.33% | 85107113 |
| 30. | NW_001092545 | TCG | 4 | 43223 | 43234 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107117 |
| 31. | NW_001092545 | CAA | 5 | 44483 | 44497 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85107117 |
| 32. | NW_001092545 | CAG | 4 | 44510 | 44521 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107117 |
| 33. | NW_001092545 | CAA | 5 | 44534 | 44548 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85107117 |
| 34. | NW_001092545 | CAA | 5 | 44963 | 44977 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85107117 |
| 35. | NW_001092545 | CAA | 8 | 45005 | 45037 | 33 | 66.67% | 0.00% | 0.00% | 33.33% | 85107117 |
| 36. | NW_001092545 | GGA | 4 | 45314 | 45325 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107117 |
| 37. | NW_001092545 | GGT | 5 | 45323 | 45337 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85107117 |
| 38. | NW_001092545 | GAT | 4 | 47797 | 47807 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107121 |
| 39. | NW_001092545 | CCT | 4 | 49384 | 49397 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | 85107125 |
| 40. | NW_001092545 | CTC | 17 | 49397 | 49447 | 51 | 0.00% | 33.33% | 0.00% | 66.67% | 85107125 |
| 41. | NW_001092545 | CTC | 8 | 49400 | 49423 | 24 | 0.00% | 33.33% | 0.00% | 66.67% | 85107125 |
| 42. | NW_001092545 | TTC | 4 | 49449 | 49460 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85107125 |
| 43. | NW_001092545 | GTG | 4 | 50279 | 50290 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 44. | NW_001092545 | CGG | 4 | 51091 | 51102 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85107129 |
| 45. | NW_001092545 | AGC | 5 | 51110 | 51124 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85107129 |
| 46. | NW_001092545 | GCC | 4 | 51255 | 51266 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85107129 |
| 47. | NW_001092545 | GGC | 5 | 51359 | 51373 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85107129 |
| 48. | NW_001092545 | GAA | 4 | 51787 | 51798 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107129 |
| 49. | NW_001092545 | TTG | 4 | 52055 | 52065 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 50. | NW_001092545 | GTT | 5 | 54741 | 54755 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85107133 |
| 51. | NW_001092545 | CTC | 4 | 57498 | 57509 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85107133 |
| 52. | NW_001092545 | TCG | 4 | 57550 | 57561 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107133 |
| 53. | NW_001092545 | CGA | 4 | 59210 | 59221 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107137 |
| 54. | NW_001092545 | TGA | 4 | 59330 | 59340 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107137 |
| 55. | NW_001092545 | GCA | 4 | 59446 | 59456 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85107137 |
| 56. | NW_001092545 | AGA | 4 | 59519 | 59529 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85107137 |
| 57. | NW_001092545 | AGG | 4 | 60193 | 60204 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107137 |
| 58. | NW_001092545 | AAG | 4 | 61015 | 61025 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 59. | NW_001092545 | CTT | 8 | 63804 | 63827 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85107141 |
| 60. | NW_001092545 | CAA | 4 | 66024 | 66035 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 61. | NW_001092545 | GAC | 4 | 66996 | 67006 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 62. | NW_001092545 | CCA | 5 | 67175 | 67190 | 16 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 63. | NW_001092545 | GAA | 4 | 72289 | 72300 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 64. | NW_001092545 | GAT | 4 | 76861 | 76872 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85107158 |
| 65. | NW_001092545 | CGT | 4 | 79260 | 79271 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 66. | NW_001092545 | GCG | 4 | 83986 | 83996 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85107162 |
| 67. | NW_001092545 | TTG | 9 | 85306 | 85332 | 27 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 68. | NW_001092545 | GGA | 4 | 89678 | 89689 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85107170 |
| 69. | NW_001092545 | CAT | 4 | 90435 | 90445 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001092545 | CCG | 4 | 91335 | 91346 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 71. | NW_001092545 | TGA | 6 | 94961 | 94978 | 18 | 33.33% | 33.33% | 33.33% | 0.00% | 85107173 |
| 72. | NW_001092545 | GCG | 4 | 95310 | 95324 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85107173 |
| 73. | NW_001092545 | AGC | 4 | 101031 | 101042 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107181 |
| 74. | NW_001092545 | TTG | 4 | 102127 | 102137 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 75. | NW_001092545 | AAC | 11 | 102548 | 102580 | 33 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 76. | NW_001092545 | GAG | 4 | 102592 | 102603 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 77. | NW_001092545 | ACA | 4 | 104641 | 104652 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85107185 |
| 78. | NW_001092545 | GTA | 4 | 106580 | 106590 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107185 |
| 79. | NW_001092545 | ATC | 4 | 112066 | 112077 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 80. | NW_001092545 | ACA | 7 | 112518 | 112538 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | 85107189 |
| 81. | NW_001092545 | ACA | 5 | 112733 | 112747 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85107189 |
| 82. | NW_001092545 | AGA | 5 | 112884 | 112898 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85107189 |
| 83. | NW_001092545 | CCA | 4 | 114925 | 114936 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107193 |
| 84. | NW_001092545 | CTG | 13 | 115074 | 115112 | 39 | 0.00% | 33.33% | 33.33% | 33.33% | 85107193 |