List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092533 | TGGC | 3 | 800 | 811 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 2. | NW_001092533 | CAGA | 3 | 1094 | 1104 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 3. | NW_001092533 | ACCA | 4 | 1355 | 1370 | 16 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 4. | NW_001092533 | TGTC | 3 | 1419 | 1430 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 5. | NW_001092533 | AACA | 3 | 1675 | 1686 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 6. | NW_001092533 | GGCC | 3 | 2522 | 2533 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | 85105602 |
| 7. | NW_001092533 | CGAT | 3 | 2897 | 2907 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 8. | NW_001092533 | CAAA | 3 | 4802 | 4813 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 9. | NW_001092533 | ATGG | 4 | 5227 | 5242 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 10. | NW_001092533 | TAGG | 3 | 5977 | 5988 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 11. | NW_001092533 | AGGG | 4 | 8203 | 8218 | 16 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 12. | NW_001092533 | CAAT | 4 | 8399 | 8414 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 13. | NW_001092533 | TATG | 4 | 8521 | 8536 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 14. | NW_001092533 | CACC | 3 | 10803 | 10813 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 15. | NW_001092533 | CATC | 3 | 11064 | 11075 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 16. | NW_001092533 | TTCC | 3 | 11296 | 11306 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 17. | NW_001092533 | TCTG | 3 | 11403 | 11414 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 18. | NW_001092533 | TACC | 3 | 12042 | 12053 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 19. | NW_001092533 | CCAG | 3 | 13224 | 13236 | 13 | 25.00% | 0.00% | 25.00% | 50.00% | 85105613 |
| 20. | NW_001092533 | TTGC | 4 | 17477 | 17492 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 21. | NW_001092533 | GCTT | 4 | 17495 | 17510 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 22. | NW_001092533 | CGAC | 7 | 18138 | 18165 | 28 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 23. | NW_001092533 | TCAG | 6 | 18649 | 18673 | 25 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 24. | NW_001092533 | GGAA | 3 | 19635 | 19645 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 25. | NW_001092533 | AGCG | 4 | 23149 | 23164 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 26. | NW_001092533 | TACT | 8 | 23245 | 23275 | 31 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 27. | NW_001092533 | TGGG | 3 | 23289 | 23300 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 28. | NW_001092533 | TTGT | 7 | 23411 | 23442 | 32 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 29. | NW_001092533 | TATG | 9 | 23610 | 23645 | 36 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 30. | NW_001092533 | CCTT | 3 | 23759 | 23770 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 31. | NW_001092533 | AAAG | 3 | 24093 | 24103 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 32. | NW_001092533 | CTAG | 4 | 24165 | 24180 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 33. | NW_001092533 | CCTC | 3 | 24197 | 24208 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 34. | NW_001092533 | GCTG | 3 | 24497 | 24508 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85105620 |
| 35. | NW_001092533 | CGGG | 5 | 25389 | 25408 | 20 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 36. | NW_001092533 | AAAT | 3 | 26078 | 26088 | 11 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 37. | NW_001092533 | TGGC | 4 | 26561 | 26576 | 16 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 38. | NW_001092533 | GGCC | 3 | 28373 | 28384 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 39. | NW_001092533 | CATG | 3 | 31991 | 32001 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85105627 |
| 40. | NW_001092533 | GGAA | 3 | 33730 | 33740 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | 85105627 |
| 41. | NW_001092533 | GATG | 7 | 37693 | 37721 | 29 | 25.00% | 25.00% | 50.00% | 0.00% | 85105631 |
| 42. | NW_001092533 | CTCC | 3 | 38400 | 38411 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85105634 |
| 43. | NW_001092533 | CCTT | 3 | 39332 | 39343 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85105634 |
| 44. | NW_001092533 | AAGC | 3 | 40080 | 40091 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 45. | NW_001092533 | CTGT | 3 | 42458 | 42469 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 46. | NW_001092533 | GGTA | 6 | 42603 | 42625 | 23 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 47. | NW_001092533 | CTCC | 4 | 42870 | 42884 | 15 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 48. | NW_001092533 | CAGC | 4 | 43090 | 43105 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 49. | NW_001092533 | CATT | 4 | 43233 | 43248 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 50. | NW_001092533 | GTCA | 4 | 43273 | 43287 | 15 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 51. | NW_001092533 | TCGT | 3 | 44476 | 44487 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85105641 |
| 52. | NW_001092533 | GGGT | 3 | 46950 | 46961 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 53. | NW_001092533 | TGAG | 3 | 47363 | 47373 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 54. | NW_001092533 | GATG | 13 | 47821 | 47872 | 52 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 55. | NW_001092533 | AGGA | 3 | 47925 | 47936 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 56. | NW_001092533 | TACC | 3 | 48457 | 48468 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 57. | NW_001092533 | GGTA | 4 | 48727 | 48742 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 58. | NW_001092533 | AAGG | 3 | 50099 | 50110 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 59. | NW_001092533 | CGAG | 3 | 51679 | 51690 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 60. | NW_001092533 | ACTC | 3 | 53257 | 53267 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 61. | NW_001092533 | CTGA | 3 | 57170 | 57181 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 62. | NW_001092533 | CGTG | 4 | 57230 | 57246 | 17 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 63. | NW_001092533 | TAGG | 4 | 60255 | 60270 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 64. | NW_001092533 | TACC | 3 | 60411 | 60422 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 65. | NW_001092533 | GTAC | 4 | 61103 | 61118 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 66. | NW_001092533 | ACTG | 3 | 61689 | 61700 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 67. | NW_001092533 | ACCT | 14 | 61874 | 61930 | 57 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |