List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092490 | TTTA | 4 | 2361 | 2376 | 16 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092490 | ATTT | 3 | 2978 | 2988 | 11 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092490 | TCCC | 3 | 4657 | 4668 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85103879 |
| 4. | NW_001092490 | AGCT | 3 | 14847 | 14858 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 5. | NW_001092490 | CATT | 3 | 19346 | 19357 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 6. | NW_001092490 | AAGG | 3 | 21208 | 21220 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 7. | NW_001092490 | CTGA | 4 | 22245 | 22260 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 8. | NW_001092490 | TTAC | 3 | 23225 | 23235 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 9. | NW_001092490 | AGTG | 3 | 24524 | 24535 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85103892 |
| 10. | NW_001092490 | GAAA | 3 | 24626 | 24637 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 85103892 |
| 11. | NW_001092490 | CCAT | 3 | 26371 | 26381 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 12. | NW_001092490 | TTGG | 3 | 29111 | 29121 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 13. | NW_001092490 | TCTT | 9 | 29592 | 29626 | 35 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001092490 | TTGT | 3 | 30063 | 30073 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 15. | NW_001092490 | TTTC | 3 | 30326 | 30337 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 16. | NW_001092490 | CTGC | 3 | 31913 | 31923 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85103909 |
| 17. | NW_001092490 | GTCA | 3 | 46343 | 46353 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85103928 |
| 18. | NW_001092490 | AGTC | 3 | 49396 | 49406 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85103928 |
| 19. | NW_001092490 | GGAC | 3 | 53296 | 53307 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85103935 |
| 20. | NW_001092490 | GTTT | 3 | 61426 | 61436 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 21. | NW_001092490 | GGGT | 3 | 63891 | 63903 | 13 | 0.00% | 25.00% | 75.00% | 0.00% | 85103944 |
| 22. | NW_001092490 | CCCT | 3 | 64372 | 64384 | 13 | 0.00% | 25.00% | 0.00% | 75.00% | 85103944 |
| 23. | NW_001092490 | CCTT | 3 | 65442 | 65452 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 24. | NW_001092490 | CAAG | 3 | 70734 | 70744 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85103951 |
| 25. | NW_001092490 | GGGT | 3 | 72520 | 72531 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 26. | NW_001092490 | GGCA | 5 | 76909 | 76931 | 23 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 27. | NW_001092490 | GGGA | 3 | 78014 | 78025 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85103969 |
| 28. | NW_001092490 | TAGG | 5 | 78813 | 78836 | 24 | 25.00% | 25.00% | 50.00% | 0.00% | 85103969 |
| 29. | NW_001092490 | TAGG | 3 | 78874 | 78885 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85103969 |
| 30. | NW_001092490 | AGAC | 3 | 79185 | 79195 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 31. | NW_001092490 | GACG | 3 | 80433 | 80443 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85103972 |
| 32. | NW_001092490 | GTAT | 4 | 82279 | 82295 | 17 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 33. | NW_001092490 | CCTG | 4 | 82761 | 82776 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 34. | NW_001092490 | GGTA | 3 | 83424 | 83434 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85103976 |
| 35. | NW_001092490 | CTGG | 3 | 83685 | 83695 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 36. | NW_001092490 | TCGG | 3 | 83723 | 83735 | 13 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 37. | NW_001092490 | CAAC | 3 | 89530 | 89542 | 13 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 38. | NW_001092490 | GGAC | 6 | 92211 | 92234 | 24 | 25.00% | 0.00% | 50.00% | 25.00% | 85103994 |
| 39. | NW_001092490 | AGAA | 4 | 94034 | 94050 | 17 | 75.00% | 0.00% | 25.00% | 0.00% | 85103998 |
| 40. | NW_001092490 | GATG | 8 | 96286 | 96316 | 31 | 25.00% | 25.00% | 50.00% | 0.00% | 85104006 |
| 41. | NW_001092490 | ATGA | 4 | 96894 | 96909 | 16 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 42. | NW_001092490 | TCAA | 3 | 97058 | 97069 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 43. | NW_001092490 | TACC | 3 | 97321 | 97332 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 44. | NW_001092490 | CTAC | 4 | 97409 | 97424 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 45. | NW_001092490 | GTCA | 3 | 101049 | 101061 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | 85104014 |
| 46. | NW_001092490 | GCAA | 3 | 101349 | 101359 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85104014 |
| 47. | NW_001092490 | GTTG | 3 | 104681 | 104692 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 48. | NW_001092490 | CAGG | 3 | 105751 | 105763 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 49. | NW_001092490 | AAAC | 3 | 107817 | 107828 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 85104026 |
| 50. | NW_001092490 | ACCT | 3 | 110465 | 110476 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 51. | NW_001092490 | GAAA | 3 | 111445 | 111456 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 52. | NW_001092490 | TACC | 5 | 111698 | 111716 | 19 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 53. | NW_001092490 | CTTC | 3 | 112287 | 112298 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85104035 |
| 54. | NW_001092490 | GGTT | 3 | 114302 | 114313 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 85104035 |
| 55. | NW_001092490 | CTTT | 3 | 118728 | 118739 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85104039 |
| 56. | NW_001092490 | GGGA | 3 | 119148 | 119158 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 57. | NW_001092490 | CAAA | 3 | 123508 | 123519 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 85104051 |
| 58. | NW_001092490 | GAAA | 3 | 124308 | 124319 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 85104051 |
| 59. | NW_001092490 | GGTC | 3 | 126589 | 126600 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 60. | NW_001092490 | AGCA | 3 | 126689 | 126701 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 61. | NW_001092490 | TCGC | 3 | 131040 | 131050 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 62. | NW_001092490 | TCAG | 3 | 133883 | 133893 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85104066 |
| 63. | NW_001092490 | AAGG | 3 | 140064 | 140076 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | 85104070 |
| 64. | NW_001092490 | AAGC | 3 | 140088 | 140098 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85104070 |
| 65. | NW_001092490 | CCAT | 3 | 150557 | 150568 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 66. | NW_001092490 | ATTG | 3 | 153519 | 153529 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | 85104094 |
| 67. | NW_001092490 | TTGG | 3 | 156092 | 156102 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 68. | NW_001092490 | GTCA | 3 | 159137 | 159147 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85104101 |
| 69. | NW_001092490 | CCCG | 3 | 161644 | 161655 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 70. | NW_001092490 | GAAA | 3 | 164879 | 164889 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 71. | NW_001092490 | CCAC | 3 | 164944 | 164954 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 72. | NW_001092490 | TACT | 3 | 171243 | 171254 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 73. | NW_001092490 | TACC | 3 | 174882 | 174893 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 74. | NW_001092490 | AAGC | 3 | 176352 | 176362 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85104126 |
| 75. | NW_001092490 | AGGA | 4 | 183226 | 183241 | 16 | 50.00% | 0.00% | 50.00% | 0.00% | 85104134 |
| 76. | NW_001092490 | GGTA | 3 | 183524 | 183535 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 77. | NW_001092490 | GCAA | 3 | 184983 | 184993 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85104138 |
| 78. | NW_001092490 | TTTA | 3 | 188935 | 188945 | 11 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 79. | NW_001092490 | CTTT | 5 | 190185 | 190204 | 20 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 80. | NW_001092490 | CAGT | 4 | 192604 | 192619 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 81. | NW_001092490 | GAAG | 4 | 193734 | 193749 | 16 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 82. | NW_001092490 | AAAG | 3 | 194533 | 194544 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 83. | NW_001092490 | GAAG | 3 | 196655 | 196666 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 84. | NW_001092490 | GCGT | 3 | 196750 | 196761 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 85. | NW_001092490 | AGGC | 3 | 199302 | 199312 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 86. | NW_001092490 | TCCT | 3 | 204537 | 204548 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 87. | NW_001092490 | GCTT | 3 | 208508 | 208518 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85104165 |
| 88. | NW_001092490 | AAGG | 3 | 217878 | 217889 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 85104181 |
| 89. | NW_001092490 | CATT | 3 | 219278 | 219288 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 90. | NW_001092490 | CTCA | 3 | 220031 | 220042 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 91. | NW_001092490 | CCTC | 3 | 220535 | 220545 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | 85104184 |
| 92. | NW_001092490 | GCTT | 3 | 220795 | 220805 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85104184 |
| 93. | NW_001092490 | GTCT | 3 | 221192 | 221202 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85104184 |
| 94. | NW_001092490 | CCGT | 3 | 223556 | 223566 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85104188 |
| 95. | NW_001092490 | TGGT | 3 | 228286 | 228297 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 96. | NW_001092490 | CTTA | 3 | 230838 | 230849 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 97. | NW_001092490 | TGCA | 4 | 237247 | 237262 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 98. | NW_001092490 | GGAA | 3 | 238040 | 238050 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | 85104212 |
| 99. | NW_001092490 | ATGG | 4 | 239349 | 239364 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | 85104216 |
| 100. | NW_001092490 | TCCA | 3 | 241395 | 241405 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85104216 |
| 101. | NW_001092490 | CATA | 3 | 241799 | 241809 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 102. | NW_001092490 | CTGT | 3 | 244916 | 244928 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | 85104220 |
| 103. | NW_001092490 | TCGA | 3 | 245556 | 245566 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 104. | NW_001092490 | TGAC | 3 | 245850 | 245861 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 105. | NW_001092490 | AAGC | 3 | 251723 | 251733 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | 85104226 |
| 106. | NW_001092490 | ATGT | 3 | 253230 | 253240 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 107. | NW_001092490 | AAGG | 3 | 255932 | 255942 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | 85104230 |
| 108. | NW_001092490 | ACTT | 3 | 257717 | 257727 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 109. | NW_001092490 | TTTC | 3 | 264844 | 264855 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 110. | NW_001092490 | GAAA | 3 | 265339 | 265350 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 111. | NW_001092490 | AGGG | 3 | 266887 | 266898 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85104240 |
| 112. | NW_001092490 | TGTC | 3 | 267798 | 267808 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85104244 |
| 113. | NW_001092490 | TCTT | 3 | 269578 | 269589 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 114. | NW_001092490 | AGAA | 4 | 277480 | 277495 | 16 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 115. | NW_001092490 | TTTC | 3 | 287753 | 287764 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85104261 |
| 116. | NW_001092490 | ACTC | 3 | 289486 | 289496 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85104261 |
| 117. | NW_001092490 | GGAG | 3 | 292184 | 292194 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85104261 |
| 118. | NW_001092490 | CAAC | 3 | 293309 | 293320 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 119. | NW_001092490 | TCCA | 3 | 294085 | 294095 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85104264 |
| 120. | NW_001092490 | CAGC | 3 | 296940 | 296951 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 121. | NW_001092490 | ACTG | 3 | 301920 | 301931 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85104277 |
| 122. | NW_001092490 | CCAG | 4 | 308273 | 308287 | 15 | 25.00% | 0.00% | 25.00% | 50.00% | 85104285 |
| 123. | NW_001092490 | AAAG | 3 | 312087 | 312098 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 124. | NW_001092490 | TCCA | 3 | 316175 | 316185 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85104293 |
| 125. | NW_001092490 | GTAC | 3 | 322864 | 322875 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |