List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092482 | ACC | 4 | 2550 | 2561 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85101373 |
| 2. | NW_001092482 | CTT | 4 | 2625 | 2636 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85101373 |
| 3. | NW_001092482 | GTG | 4 | 3010 | 3021 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 4. | NW_001092482 | TGC | 5 | 3027 | 3041 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 5. | NW_001092482 | TCC | 4 | 3084 | 3095 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 6. | NW_001092482 | ATG | 5 | 3255 | 3269 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 7. | NW_001092482 | AAC | 4 | 5129 | 5140 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 8. | NW_001092482 | CCT | 4 | 6175 | 6186 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85101382 |
| 9. | NW_001092482 | TTG | 7 | 6221 | 6241 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85101382 |
| 10. | NW_001092482 | GCG | 4 | 6939 | 6950 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85101382 |
| 11. | NW_001092482 | AGC | 5 | 7733 | 7747 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85101382 |
| 12. | NW_001092482 | AAG | 4 | 8704 | 8714 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092482 | TAG | 4 | 10742 | 10752 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 14. | NW_001092482 | CAA | 4 | 11074 | 11085 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 15. | NW_001092482 | CGT | 4 | 11086 | 11097 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 16. | NW_001092482 | GGA | 5 | 12974 | 12989 | 16 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 17. | NW_001092482 | CTT | 4 | 15738 | 15748 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092482 | TGA | 4 | 24641 | 24652 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 19. | NW_001092482 | GGC | 5 | 25185 | 25199 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 20. | NW_001092482 | GAA | 4 | 31106 | 31118 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 21. | NW_001092482 | ATG | 4 | 31524 | 31535 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 22. | NW_001092482 | GGC | 4 | 32159 | 32170 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85101398 |
| 23. | NW_001092482 | GCG | 4 | 32235 | 32246 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85101398 |
| 24. | NW_001092482 | GGT | 4 | 32364 | 32375 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101398 |
| 25. | NW_001092482 | CGG | 4 | 32907 | 32919 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 26. | NW_001092482 | CTC | 4 | 35934 | 35945 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85101406 |
| 27. | NW_001092482 | GTA | 11 | 37529 | 37560 | 32 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 28. | NW_001092482 | GGA | 5 | 37555 | 37569 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 29. | NW_001092482 | TCG | 4 | 37720 | 37731 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 30. | NW_001092482 | GCT | 7 | 37790 | 37810 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85101410 |
| 31. | NW_001092482 | GCA | 12 | 37911 | 37946 | 36 | 33.33% | 0.00% | 33.33% | 33.33% | 85101410 |
| 32. | NW_001092482 | GCT | 5 | 40612 | 40626 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 33. | NW_001092482 | TCT | 5 | 43088 | 43102 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 34. | NW_001092482 | CAG | 4 | 44667 | 44678 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 35. | NW_001092482 | CAC | 4 | 44917 | 44928 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 36. | NW_001092482 | CGA | 4 | 45168 | 45179 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092482 | GAC | 4 | 45711 | 45721 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 38. | NW_001092482 | AGC | 11 | 45719 | 45752 | 34 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 39. | NW_001092482 | TGC | 4 | 45947 | 45958 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 40. | NW_001092482 | GAT | 4 | 51132 | 51143 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85101427 |
| 41. | NW_001092482 | GAC | 4 | 53335 | 53345 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85101427 |
| 42. | NW_001092482 | GCT | 5 | 53596 | 53610 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85101427 |
| 43. | NW_001092482 | GCG | 4 | 53617 | 53628 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85101427 |
| 44. | NW_001092482 | CTC | 4 | 54326 | 54337 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85101432 |
| 45. | NW_001092482 | TGA | 4 | 55115 | 55126 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85101432 |
| 46. | NW_001092482 | GGA | 4 | 55289 | 55300 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85101432 |
| 47. | NW_001092482 | AGC | 4 | 55443 | 55454 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85101432 |
| 48. | NW_001092482 | TGT | 4 | 55551 | 55561 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 49. | NW_001092482 | GTG | 14 | 55674 | 55715 | 42 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 50. | NW_001092482 | CTT | 4 | 57066 | 57077 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85101437 |
| 51. | NW_001092482 | ACA | 6 | 59434 | 59451 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 52. | NW_001092482 | ACA | 5 | 59464 | 59477 | 14 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 53. | NW_001092482 | CAT | 4 | 61581 | 61592 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 54. | NW_001092482 | TGT | 4 | 62406 | 62417 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 55. | NW_001092482 | ACA | 4 | 63169 | 63179 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 56. | NW_001092482 | CGC | 4 | 63390 | 63401 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85101441 |
| 57. | NW_001092482 | TGG | 5 | 66307 | 66321 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85101441 |
| 58. | NW_001092482 | TCC | 4 | 67001 | 67013 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 59. | NW_001092482 | TGA | 4 | 67795 | 67806 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85101446 |
| 60. | NW_001092482 | CGA | 4 | 72648 | 72659 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85101451 |
| 61. | NW_001092482 | GTA | 4 | 73820 | 73830 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 62. | NW_001092482 | CTG | 4 | 74113 | 74123 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85101455 |
| 63. | NW_001092482 | GTT | 5 | 74914 | 74928 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85101455 |
| 64. | NW_001092482 | GTG | 4 | 74935 | 74946 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101455 |
| 65. | NW_001092482 | CAA | 4 | 75190 | 75200 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 66. | NW_001092482 | CTA | 4 | 76165 | 76175 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 67. | NW_001092482 | ACT | 4 | 77351 | 77362 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85101460 |
| 68. | NW_001092482 | GTG | 4 | 77996 | 78007 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101460 |
| 69. | NW_001092482 | CGA | 4 | 79371 | 79382 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85101464 |
| 70. | NW_001092482 | ATG | 4 | 79475 | 79486 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85101464 |
| 71. | NW_001092482 | TGA | 5 | 79542 | 79556 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85101464 |
| 72. | NW_001092482 | CGC | 4 | 81559 | 81570 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85101469 |
| 73. | NW_001092482 | TCT | 5 | 83364 | 83378 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 74. | NW_001092482 | TGA | 4 | 85321 | 85331 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 75. | NW_001092482 | GCA | 4 | 86363 | 86374 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85101477 |
| 76. | NW_001092482 | TGG | 4 | 86502 | 86513 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101477 |
| 77. | NW_001092482 | CTC | 4 | 87673 | 87684 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85101477 |
| 78. | NW_001092482 | CTT | 4 | 87802 | 87813 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85101477 |
| 79. | NW_001092482 | CTT | 4 | 87859 | 87870 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85101477 |
| 80. | NW_001092482 | GCG | 4 | 91792 | 91806 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 81. | NW_001092482 | GAT | 4 | 92161 | 92172 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 82. | NW_001092482 | TGT | 4 | 92762 | 92773 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 83. | NW_001092482 | GGT | 4 | 94495 | 94505 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 84. | NW_001092482 | GTC | 6 | 96243 | 96260 | 18 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 85. | NW_001092482 | CGT | 4 | 96282 | 96292 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 86. | NW_001092482 | ACT | 4 | 97175 | 97188 | 14 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 87. | NW_001092482 | ACC | 4 | 100409 | 100420 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85101491 |
| 88. | NW_001092482 | GAT | 5 | 101365 | 101379 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85101491 |
| 89. | NW_001092482 | GAT | 7 | 101407 | 101427 | 21 | 33.33% | 33.33% | 33.33% | 0.00% | 85101491 |
| 90. | NW_001092482 | AAC | 4 | 101604 | 101616 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 91. | NW_001092482 | TGC | 4 | 103363 | 103373 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 92. | NW_001092482 | TGG | 4 | 104189 | 104200 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101495 |
| 93. | NW_001092482 | GGA | 7 | 104392 | 104412 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 94. | NW_001092482 | CAT | 4 | 105145 | 105155 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 95. | NW_001092482 | CAG | 4 | 106515 | 106525 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85101499 |
| 96. | NW_001092482 | CGC | 4 | 107963 | 107973 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85101499 |
| 97. | NW_001092482 | TGG | 7 | 109536 | 109556 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85101503 |
| 98. | NW_001092482 | CAG | 4 | 109876 | 109886 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 99. | NW_001092482 | GTG | 5 | 109958 | 109973 | 16 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 100. | NW_001092482 | AAC | 4 | 110228 | 110239 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 101. | NW_001092482 | TCA | 4 | 112692 | 112703 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85101512 |
| 102. | NW_001092482 | GTG | 9 | 112957 | 112984 | 28 | 0.00% | 33.33% | 66.67% | 0.00% | 85101512 |
| 103. | NW_001092482 | GGT | 4 | 113005 | 113016 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101512 |
| 104. | NW_001092482 | TCA | 7 | 113989 | 114008 | 20 | 33.33% | 33.33% | 0.00% | 33.33% | 85101516 |
| 105. | NW_001092482 | GCA | 4 | 115203 | 115214 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85101516 |
| 106. | NW_001092482 | TGG | 4 | 119954 | 119965 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85101521 |
| 107. | NW_001092482 | AGG | 4 | 120497 | 120507 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85101521 |
| 108. | NW_001092482 | TTG | 4 | 122305 | 122316 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 109. | NW_001092482 | AGA | 8 | 123657 | 123680 | 24 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 110. | NW_001092482 | CCG | 4 | 125893 | 125904 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 111. | NW_001092482 | ACG | 4 | 131761 | 131772 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85101539 |
| 112. | NW_001092482 | GTT | 4 | 133295 | 133306 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85101539 |
| 113. | NW_001092482 | GAA | 4 | 133426 | 133437 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85101539 |
| 114. | NW_001092482 | TAG | 4 | 135079 | 135090 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 115. | NW_001092482 | ATA | 4 | 136660 | 136670 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 116. | NW_001092482 | CAG | 4 | 138911 | 138921 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 117. | NW_001092482 | AGA | 4 | 141173 | 141184 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |