List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092482 | CCTT | 3 | 1228 | 1239 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85101369 |
| 2. | NW_001092482 | TCGT | 4 | 3377 | 3391 | 15 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 3. | NW_001092482 | TACG | 4 | 3569 | 3584 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 4. | NW_001092482 | TTCC | 3 | 4022 | 4033 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 5. | NW_001092482 | ATCG | 3 | 4206 | 4217 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001092482 | GCAA | 3 | 9234 | 9245 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85101386 |
| 7. | NW_001092482 | TTTG | 3 | 10053 | 10064 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 8. | NW_001092482 | GTTA | 3 | 12167 | 12178 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 9. | NW_001092482 | AGGT | 4 | 13612 | 13627 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 10. | NW_001092482 | TCGA | 3 | 15908 | 15919 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 11. | NW_001092482 | CCAG | 3 | 20441 | 20452 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 12. | NW_001092482 | AAGC | 3 | 20506 | 20517 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 13. | NW_001092482 | CAGC | 4 | 22643 | 22662 | 20 | 25.00% | 0.00% | 25.00% | 50.00% | 85101390 |
| 14. | NW_001092482 | TGCA | 3 | 22707 | 22717 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85101390 |
| 15. | NW_001092482 | TCGA | 3 | 24891 | 24902 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 16. | NW_001092482 | CCTT | 3 | 25360 | 25371 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 17. | NW_001092482 | CGTC | 4 | 25462 | 25477 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 18. | NW_001092482 | TCCT | 3 | 26359 | 26370 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 19. | NW_001092482 | GTCT | 3 | 26451 | 26462 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 20. | NW_001092482 | CCCT | 3 | 31772 | 31783 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85101398 |
| 21. | NW_001092482 | GGCA | 3 | 36677 | 36687 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 22. | NW_001092482 | CCAG | 3 | 39302 | 39312 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 23. | NW_001092482 | TGCC | 3 | 39953 | 39963 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 24. | NW_001092482 | GTAC | 4 | 43924 | 43939 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | 85101414 |
| 25. | NW_001092482 | AGCT | 3 | 44536 | 44547 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 26. | NW_001092482 | AAAC | 3 | 44580 | 44590 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 27. | NW_001092482 | CAAA | 5 | 45047 | 45067 | 21 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 28. | NW_001092482 | GGCG | 3 | 46470 | 46481 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 29. | NW_001092482 | CTAC | 4 | 46641 | 46656 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 30. | NW_001092482 | CAAA | 3 | 47272 | 47282 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 31. | NW_001092482 | AGCC | 3 | 50750 | 50761 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 32. | NW_001092482 | GGCG | 3 | 55956 | 55967 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 33. | NW_001092482 | AAAG | 3 | 56436 | 56447 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 34. | NW_001092482 | AGAA | 3 | 60923 | 60933 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 35. | NW_001092482 | ATCC | 3 | 61859 | 61870 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 36. | NW_001092482 | TTCA | 6 | 61871 | 61894 | 24 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 37. | NW_001092482 | CTGC | 4 | 62226 | 62241 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 38. | NW_001092482 | TGAT | 3 | 62477 | 62488 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 39. | NW_001092482 | ACAT | 10 | 62767 | 62806 | 40 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 40. | NW_001092482 | AATA | 3 | 63238 | 63248 | 11 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 41. | NW_001092482 | GTAG | 3 | 64951 | 64961 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85101441 |
| 42. | NW_001092482 | AACT | 3 | 68351 | 68361 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | 85101446 |
| 43. | NW_001092482 | GACT | 3 | 70486 | 70498 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 44. | NW_001092482 | ACCG | 3 | 71335 | 71346 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 45. | NW_001092482 | TCCC | 3 | 74515 | 74525 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | 85101455 |
| 46. | NW_001092482 | AGTG | 3 | 75066 | 75077 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 47. | NW_001092482 | TCTT | 3 | 84376 | 84387 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 48. | NW_001092482 | GCAT | 3 | 85958 | 85970 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 49. | NW_001092482 | TCCT | 6 | 87638 | 87659 | 22 | 0.00% | 50.00% | 0.00% | 50.00% | 85101477 |
| 50. | NW_001092482 | TTGG | 3 | 88325 | 88336 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 51. | NW_001092482 | AGTG | 3 | 88976 | 88986 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 52. | NW_001092482 | TGGT | 3 | 90934 | 90945 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 85101481 |
| 53. | NW_001092482 | TGTT | 3 | 91462 | 91473 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 54. | NW_001092482 | GTAG | 4 | 91550 | 91565 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 55. | NW_001092482 | AGGG | 3 | 91581 | 91591 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 56. | NW_001092482 | TGAT | 8 | 93776 | 93807 | 32 | 25.00% | 50.00% | 25.00% | 0.00% | 85101486 |
| 57. | NW_001092482 | CACC | 3 | 94702 | 94712 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 58. | NW_001092482 | TCGA | 3 | 98514 | 98525 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85101491 |
| 59. | NW_001092482 | ACTC | 3 | 102283 | 102294 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 60. | NW_001092482 | TTTG | 3 | 105671 | 105682 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 61. | NW_001092482 | TGTA | 3 | 109888 | 109902 | 15 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 62. | NW_001092482 | TGGA | 8 | 110194 | 110225 | 32 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 63. | NW_001092482 | CTTC | 4 | 110450 | 110465 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 64. | NW_001092482 | CACT | 8 | 110744 | 110775 | 32 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 65. | NW_001092482 | CTGC | 3 | 111319 | 111330 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85101507 |
| 66. | NW_001092482 | CGGG | 3 | 111496 | 111506 | 11 | 0.00% | 0.00% | 75.00% | 25.00% | 85101507 |
| 67. | NW_001092482 | TCCA | 3 | 112599 | 112609 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85101512 |
| 68. | NW_001092482 | AGCG | 3 | 117228 | 117238 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 69. | NW_001092482 | CAGC | 4 | 125327 | 125342 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 70. | NW_001092482 | TCAA | 3 | 125447 | 125458 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 71. | NW_001092482 | CTTC | 4 | 126229 | 126244 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 72. | NW_001092482 | TTCG | 3 | 126745 | 126756 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 73. | NW_001092482 | CAGT | 3 | 128306 | 128316 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 74. | NW_001092482 | CTTA | 3 | 130247 | 130258 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 75. | NW_001092482 | GGAT | 3 | 133761 | 133772 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 76. | NW_001092482 | TCAC | 3 | 137096 | 137107 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85101548 |
| 77. | NW_001092482 | TGGC | 3 | 139054 | 139065 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |