List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092472 | TAA | 4 | 1232 | 1242 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092472 | TAA | 4 | 1488 | 1499 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092472 | GAG | 4 | 1868 | 1879 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 4. | NW_001092472 | CTC | 5 | 2776 | 2789 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 5. | NW_001092472 | TAT | 4 | 2960 | 2974 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092472 | ATT | 4 | 3276 | 3287 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 7. | NW_001092472 | TTA | 4 | 3356 | 3367 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 8. | NW_001092472 | ATT | 7 | 3558 | 3578 | 21 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 9. | NW_001092472 | TAC | 4 | 3895 | 3906 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 10. | NW_001092472 | ATT | 4 | 3977 | 3989 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 11. | NW_001092472 | TAG | 4 | 4108 | 4118 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 12. | NW_001092472 | TAG | 4 | 4121 | 4131 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092472 | AAC | 4 | 5766 | 5777 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85099933 |
| 14. | NW_001092472 | TTC | 4 | 7208 | 7219 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85099937 |
| 15. | NW_001092472 | GGA | 4 | 8254 | 8265 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85099937 |
| 16. | NW_001092472 | TCC | 4 | 8773 | 8784 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85099937 |
| 17. | NW_001092472 | GAT | 6 | 9079 | 9099 | 21 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 18. | NW_001092472 | AGA | 4 | 9720 | 9731 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 19. | NW_001092472 | GCA | 4 | 11314 | 11325 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 20. | NW_001092472 | CGA | 4 | 12045 | 12056 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 21. | NW_001092472 | CTC | 4 | 14575 | 14586 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85099941 |
| 22. | NW_001092472 | GGC | 4 | 15296 | 15308 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85099941 |
| 23. | NW_001092472 | GCC | 6 | 16575 | 16591 | 17 | 0.00% | 0.00% | 33.33% | 66.67% | 85099941 |
| 24. | NW_001092472 | GCA | 4 | 17119 | 17130 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099941 |
| 25. | NW_001092472 | CAT | 8 | 17553 | 17576 | 24 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 26. | NW_001092472 | CAT | 5 | 17599 | 17613 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001092472 | CAT | 4 | 17662 | 17672 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 28. | NW_001092472 | AGA | 4 | 17902 | 17912 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 29. | NW_001092472 | GCT | 4 | 21317 | 21328 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 30. | NW_001092472 | ACA | 4 | 26641 | 26651 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 31. | NW_001092472 | GAT | 4 | 28032 | 28042 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 32. | NW_001092472 | ACG | 4 | 29333 | 29343 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 33. | NW_001092472 | AGA | 4 | 30411 | 30422 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 34. | NW_001092472 | TAT | 4 | 33639 | 33650 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | 85099957 |
| 35. | NW_001092472 | TAT | 5 | 33998 | 34012 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 36. | NW_001092472 | CTT | 4 | 34703 | 34714 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 37. | NW_001092472 | AAT | 4 | 35264 | 35275 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 38. | NW_001092472 | TGA | 4 | 36391 | 36402 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 39. | NW_001092472 | TGT | 4 | 36728 | 36738 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 40. | NW_001092472 | GTT | 4 | 36745 | 36756 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 41. | NW_001092472 | TGT | 5 | 37719 | 37734 | 16 | 0.00% | 66.67% | 33.33% | 0.00% | 85099961 |
| 42. | NW_001092472 | GAT | 4 | 41864 | 41875 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85099966 |
| 43. | NW_001092472 | TCG | 4 | 42752 | 42764 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85099966 |
| 44. | NW_001092472 | AGA | 4 | 44263 | 44274 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85099966 |
| 45. | NW_001092472 | TGT | 4 | 45686 | 45698 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 46. | NW_001092472 | GCT | 4 | 45944 | 45954 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 47. | NW_001092472 | CCG | 4 | 46335 | 46346 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85099970 |
| 48. | NW_001092472 | ATC | 4 | 50141 | 50151 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85099974 |
| 49. | NW_001092472 | CTT | 4 | 50549 | 50560 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85099978 |
| 50. | NW_001092472 | GTT | 5 | 51573 | 51587 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85099978 |
| 51. | NW_001092472 | GAT | 8 | 51752 | 51775 | 24 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 52. | NW_001092472 | GAA | 4 | 52258 | 52269 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001092472 | TCG | 4 | 53479 | 53490 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 54. | NW_001092472 | GGA | 4 | 55067 | 55078 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85099982 |
| 55. | NW_001092472 | CAA | 4 | 58185 | 58196 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 56. | NW_001092472 | TCC | 5 | 62066 | 62080 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |