List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092434 | TCG | 4 | 1733 | 1745 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 2. | NW_001092434 | TCC | 5 | 3461 | 3475 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85097481 |
| 3. | NW_001092434 | TTA | 4 | 4917 | 4929 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092434 | CCT | 4 | 5272 | 5283 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 5. | NW_001092434 | TTA | 4 | 5669 | 5680 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092434 | GTA | 5 | 5811 | 5825 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 7. | NW_001092434 | TAA | 4 | 5906 | 5916 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 8. | NW_001092434 | TTA | 4 | 6388 | 6399 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 9. | NW_001092434 | TAT | 5 | 6545 | 6558 | 14 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 10. | NW_001092434 | TAG | 5 | 6572 | 6586 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 11. | NW_001092434 | TAT | 4 | 6656 | 6667 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 12. | NW_001092434 | TCT | 4 | 7556 | 7566 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 13. | NW_001092434 | AAT | 4 | 7587 | 7599 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 14. | NW_001092434 | TAT | 4 | 8004 | 8015 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 15. | NW_001092434 | TAA | 4 | 8332 | 8342 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 16. | NW_001092434 | TCC | 6 | 9188 | 9205 | 18 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 17. | NW_001092434 | CTC | 7 | 9313 | 9333 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 18. | NW_001092434 | CCT | 5 | 9364 | 9379 | 16 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 19. | NW_001092434 | TCC | 4 | 9401 | 9412 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 20. | NW_001092434 | TGG | 4 | 9861 | 9871 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 21. | NW_001092434 | CAA | 4 | 16869 | 16880 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 22. | NW_001092434 | CGC | 4 | 18534 | 18545 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85097509 |
| 23. | NW_001092434 | AAG | 4 | 22831 | 22841 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 24. | NW_001092434 | TCT | 4 | 27853 | 27863 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 25. | NW_001092434 | TCA | 4 | 27898 | 27912 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 26. | NW_001092434 | CTC | 7 | 28008 | 28029 | 22 | 0.00% | 33.33% | 0.00% | 66.67% | 85097516 |
| 27. | NW_001092434 | CGG | 7 | 28361 | 28381 | 21 | 0.00% | 0.00% | 66.67% | 33.33% | 85097516 |
| 28. | NW_001092434 | GGA | 4 | 28980 | 28991 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85097516 |
| 29. | NW_001092434 | GAA | 4 | 31862 | 31873 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85097520 |
| 30. | NW_001092434 | GCG | 4 | 31992 | 32003 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85097520 |
| 31. | NW_001092434 | CTC | 8 | 33505 | 33529 | 25 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 32. | NW_001092434 | CTC | 4 | 34765 | 34776 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 33. | NW_001092434 | TCT | 4 | 36481 | 36492 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 34. | NW_001092434 | TGT | 4 | 40577 | 40588 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001092434 | TGC | 4 | 41309 | 41320 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 36. | NW_001092434 | CCA | 4 | 43082 | 43094 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85097532 |
| 37. | NW_001092434 | ACC | 5 | 43581 | 43595 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85097532 |
| 38. | NW_001092434 | AAG | 5 | 43778 | 43792 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85097532 |
| 39. | NW_001092434 | GCC | 4 | 43793 | 43804 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85097532 |
| 40. | NW_001092434 | CAC | 7 | 47789 | 47809 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85097540 |
| 41. | NW_001092434 | TAC | 4 | 49049 | 49059 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 42. | NW_001092434 | TCC | 4 | 50843 | 50854 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 43. | NW_001092434 | TTG | 7 | 52802 | 52823 | 22 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 44. | NW_001092434 | GAG | 14 | 52864 | 52904 | 41 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 45. | NW_001092434 | CAA | 10 | 54782 | 54811 | 30 | 66.67% | 0.00% | 0.00% | 33.33% | 85097548 |
| 46. | NW_001092434 | AGA | 4 | 58970 | 58981 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85097548 |
| 47. | NW_001092434 | GGC | 5 | 59978 | 59992 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85097548 |
| 48. | NW_001092434 | GGC | 4 | 60032 | 60042 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85097548 |
| 49. | NW_001092434 | CGG | 5 | 60222 | 60236 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85097548 |
| 50. | NW_001092434 | GTG | 4 | 60242 | 60253 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85097548 |
| 51. | NW_001092434 | TGG | 4 | 60255 | 60266 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85097548 |
| 52. | NW_001092434 | GGA | 4 | 60415 | 60426 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85097548 |
| 53. | NW_001092434 | CTC | 4 | 60970 | 60980 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 54. | NW_001092434 | ATC | 7 | 64053 | 64073 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 55. | NW_001092434 | GTC | 4 | 65163 | 65174 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 56. | NW_001092434 | GCG | 5 | 65264 | 65277 | 14 | 0.00% | 0.00% | 66.67% | 33.33% | 85097556 |
| 57. | NW_001092434 | TGC | 15 | 65506 | 65550 | 45 | 0.00% | 33.33% | 33.33% | 33.33% | 85097556 |
| 58. | NW_001092434 | GTG | 8 | 65555 | 65579 | 25 | 0.00% | 33.33% | 66.67% | 0.00% | 85097556 |
| 59. | NW_001092434 | GGC | 4 | 65816 | 65828 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85097556 |
| 60. | NW_001092434 | TGG | 4 | 66117 | 66128 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 61. | NW_001092434 | ACC | 4 | 69341 | 69352 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 62. | NW_001092434 | TCC | 4 | 72942 | 72953 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 63. | NW_001092434 | TCT | 4 | 72991 | 73001 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 64. | NW_001092434 | CTT | 5 | 73028 | 73042 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001092434 | TCT | 5 | 73073 | 73087 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 66. | NW_001092434 | TCT | 4 | 73096 | 73107 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 67. | NW_001092434 | TCT | 4 | 73147 | 73159 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 68. | NW_001092434 | TCA | 5 | 73214 | 73228 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 69. | NW_001092434 | TCA | 5 | 73249 | 73263 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001092434 | CAT | 5 | 73269 | 73283 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 71. | NW_001092434 | CAT | 4 | 73291 | 73302 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 72. | NW_001092434 | TTC | 4 | 73324 | 73335 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 73. | NW_001092434 | ACG | 5 | 79633 | 79647 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 74. | NW_001092434 | GCA | 4 | 80492 | 80502 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 75. | NW_001092434 | CAC | 4 | 83576 | 83586 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 76. | NW_001092434 | TTG | 4 | 84290 | 84301 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 77. | NW_001092434 | CGA | 4 | 84742 | 84753 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097574 |
| 78. | NW_001092434 | CAA | 9 | 85713 | 85739 | 27 | 66.67% | 0.00% | 0.00% | 33.33% | 85097574 |
| 79. | NW_001092434 | AAC | 4 | 85759 | 85770 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85097574 |
| 80. | NW_001092434 | GCG | 4 | 85834 | 85844 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 81. | NW_001092434 | TTC | 4 | 92656 | 92666 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 82. | NW_001092434 | GTC | 4 | 93822 | 93833 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 83. | NW_001092434 | TGA | 4 | 95069 | 95080 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 84. | NW_001092434 | GAA | 4 | 95563 | 95574 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 85. | NW_001092434 | AAG | 4 | 95929 | 95943 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 86. | NW_001092434 | CTG | 4 | 98520 | 98531 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85097582 |
| 87. | NW_001092434 | CGC | 4 | 99342 | 99353 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85097582 |
| 88. | NW_001092434 | CTT | 5 | 100542 | 100556 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85097586 |
| 89. | NW_001092434 | GTC | 4 | 101247 | 101258 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 90. | NW_001092434 | AGG | 4 | 102061 | 102072 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85097590 |
| 91. | NW_001092434 | CAG | 4 | 102164 | 102175 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097590 |
| 92. | NW_001092434 | CAA | 4 | 103655 | 103669 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85097590 |
| 93. | NW_001092434 | ACA | 4 | 103812 | 103824 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | 85097590 |
| 94. | NW_001092434 | CGA | 4 | 104955 | 104965 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85097590 |
| 95. | NW_001092434 | AAG | 6 | 105511 | 105528 | 18 | 66.67% | 0.00% | 33.33% | 0.00% | 85097590 |
| 96. | NW_001092434 | TGT | 6 | 106270 | 106286 | 17 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 97. | NW_001092434 | ACT | 4 | 107072 | 107083 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85097594 |
| 98. | NW_001092434 | GAG | 4 | 107120 | 107131 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85097594 |
| 99. | NW_001092434 | GCC | 5 | 107300 | 107314 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85097594 |
| 100. | NW_001092434 | GAG | 8 | 107366 | 107389 | 24 | 33.33% | 0.00% | 66.67% | 0.00% | 85097594 |
| 101. | NW_001092434 | CTC | 4 | 110005 | 110016 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85097598 |
| 102. | NW_001092434 | GAA | 4 | 110463 | 110474 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85097598 |
| 103. | NW_001092434 | CGC | 4 | 110782 | 110794 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85097598 |
| 104. | NW_001092434 | GTC | 4 | 112224 | 112235 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85097602 |
| 105. | NW_001092434 | CGG | 4 | 112690 | 112700 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 106. | NW_001092434 | TGG | 12 | 112704 | 112739 | 36 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 107. | NW_001092434 | CAA | 4 | 116859 | 116870 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 108. | NW_001092434 | TGC | 5 | 116898 | 116912 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 109. | NW_001092434 | CAG | 4 | 118312 | 118323 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097610 |
| 110. | NW_001092434 | TGG | 4 | 118760 | 118771 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85097610 |
| 111. | NW_001092434 | GCA | 4 | 119959 | 119970 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097614 |
| 112. | NW_001092434 | CTC | 4 | 123826 | 123837 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 113. | NW_001092434 | CTG | 4 | 124483 | 124493 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 114. | NW_001092434 | CAC | 4 | 126936 | 126947 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 115. | NW_001092434 | ATC | 4 | 127342 | 127353 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 116. | NW_001092434 | AAG | 4 | 127792 | 127803 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85097619 |
| 117. | NW_001092434 | ATG | 4 | 128029 | 128040 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85097619 |
| 118. | NW_001092434 | AGG | 4 | 129426 | 129436 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 119. | NW_001092434 | TGG | 5 | 130266 | 130280 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 120. | NW_001092434 | GCC | 4 | 133730 | 133740 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85097627 |
| 121. | NW_001092434 | GGT | 4 | 134948 | 134959 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85097627 |
| 122. | NW_001092434 | GCT | 4 | 134969 | 134980 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85097627 |
| 123. | NW_001092434 | TGA | 4 | 136033 | 136044 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85097630 |
| 124. | NW_001092434 | TTG | 4 | 136760 | 136771 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 125. | NW_001092434 | CTC | 4 | 138192 | 138203 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85097634 |
| 126. | NW_001092434 | GCC | 4 | 138526 | 138536 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85097634 |
| 127. | NW_001092434 | TGG | 4 | 145291 | 145302 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 128. | NW_001092434 | AAC | 4 | 145398 | 145409 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 129. | NW_001092434 | CGA | 4 | 149456 | 149467 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097646 |
| 130. | NW_001092434 | TTC | 4 | 151742 | 151753 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 131. | NW_001092434 | GAC | 4 | 154021 | 154032 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097650 |
| 132. | NW_001092434 | GGT | 4 | 158779 | 158790 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 133. | NW_001092434 | CCT | 4 | 159352 | 159363 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 134. | NW_001092434 | CTC | 4 | 160690 | 160701 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85097662 |
| 135. | NW_001092434 | CTT | 4 | 161172 | 161183 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85097662 |
| 136. | NW_001092434 | CTT | 5 | 161190 | 161204 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85097662 |
| 137. | NW_001092434 | CTT | 4 | 161211 | 161225 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85097662 |
| 138. | NW_001092434 | TCA | 7 | 161332 | 161352 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | 85097662 |
| 139. | NW_001092434 | TTG | 4 | 163717 | 163728 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85097666 |
| 140. | NW_001092434 | GGC | 4 | 165884 | 165894 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 141. | NW_001092434 | GCA | 4 | 166846 | 166857 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 142. | NW_001092434 | CTT | 4 | 167603 | 167614 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85097675 |
| 143. | NW_001092434 | TAC | 4 | 169943 | 169953 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 144. | NW_001092434 | AGC | 4 | 176626 | 176637 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85097688 |
| 145. | NW_001092434 | AGA | 5 | 180200 | 180214 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 146. | NW_001092434 | TAT | 5 | 181371 | 181385 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 147. | NW_001092434 | TTC | 5 | 181383 | 181397 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 148. | NW_001092434 | TCT | 4 | 183718 | 183728 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |