List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092433 | ATGG | 3 | 3930 | 3940 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85097269 |
| 2. | NW_001092433 | TTTG | 3 | 4516 | 4526 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | 85097269 |
| 3. | NW_001092433 | CCAA | 3 | 7280 | 7290 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 4. | NW_001092433 | TATG | 3 | 10081 | 10092 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 5. | NW_001092433 | GTAA | 3 | 20553 | 20563 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | 85097290 |
| 6. | NW_001092433 | CTTC | 3 | 23926 | 23936 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | 85097294 |
| 7. | NW_001092433 | TGAA | 3 | 26816 | 26828 | 13 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 8. | NW_001092433 | CTTT | 3 | 27425 | 27436 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 9. | NW_001092433 | GGTA | 4 | 28433 | 28448 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 10. | NW_001092433 | ATGT | 4 | 28450 | 28465 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 11. | NW_001092433 | CCAT | 3 | 29669 | 29681 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 12. | NW_001092433 | ACCC | 3 | 30281 | 30293 | 13 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 13. | NW_001092433 | TCCG | 3 | 31162 | 31173 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85097300 |
| 14. | NW_001092433 | GGCC | 3 | 31282 | 31292 | 11 | 0.00% | 0.00% | 50.00% | 50.00% | 85097300 |
| 15. | NW_001092433 | TGGC | 3 | 33330 | 33341 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85097300 |
| 16. | NW_001092433 | GGTA | 3 | 38532 | 38543 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 17. | NW_001092433 | GAAA | 3 | 38661 | 38672 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 18. | NW_001092433 | TTGA | 3 | 40649 | 40660 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 85097304 |
| 19. | NW_001092433 | TATG | 4 | 41977 | 41992 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 20. | NW_001092433 | AAAG | 3 | 42222 | 42232 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 21. | NW_001092433 | TGGA | 5 | 42482 | 42501 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 22. | NW_001092433 | GACG | 3 | 44125 | 44136 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 23. | NW_001092433 | TGTT | 3 | 44431 | 44442 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 24. | NW_001092433 | GCTG | 3 | 45498 | 45509 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85097312 |
| 25. | NW_001092433 | TTGC | 6 | 47253 | 47275 | 23 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 26. | NW_001092433 | GCCA | 6 | 47833 | 47855 | 23 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 27. | NW_001092433 | ACAG | 3 | 51042 | 51053 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 28. | NW_001092433 | GCTG | 3 | 51074 | 51085 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 29. | NW_001092433 | CAGA | 3 | 51173 | 51183 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 30. | NW_001092433 | GCCG | 3 | 51539 | 51550 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 31. | NW_001092433 | CGCC | 3 | 57448 | 57460 | 13 | 0.00% | 0.00% | 25.00% | 75.00% | 85097324 |
| 32. | NW_001092433 | ACTG | 3 | 58535 | 58546 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85097324 |
| 33. | NW_001092433 | GTTG | 3 | 59873 | 59883 | 11 | 0.00% | 50.00% | 50.00% | 0.00% | 85097324 |
| 34. | NW_001092433 | TCGT | 3 | 60314 | 60324 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 35. | NW_001092433 | ACAG | 3 | 61446 | 61457 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85097328 |
| 36. | NW_001092433 | GCAA | 3 | 64291 | 64301 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 37. | NW_001092433 | AATC | 3 | 65469 | 65480 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 38. | NW_001092433 | ATTC | 3 | 70530 | 70541 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 39. | NW_001092433 | ATTG | 3 | 70554 | 70565 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 40. | NW_001092433 | ACAA | 3 | 70789 | 70800 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 41. | NW_001092433 | CGAC | 8 | 71324 | 71355 | 32 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 42. | NW_001092433 | GTTT | 6 | 76060 | 76083 | 24 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 43. | NW_001092433 | CATG | 3 | 81226 | 81238 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 44. | NW_001092433 | GAGG | 3 | 84541 | 84552 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 45. | NW_001092433 | TGGA | 4 | 86408 | 86423 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 46. | NW_001092433 | TTGA | 7 | 88063 | 88090 | 28 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 47. | NW_001092433 | TAAG | 3 | 88709 | 88720 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 48. | NW_001092433 | AGAA | 6 | 94965 | 94987 | 23 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 49. | NW_001092433 | CACT | 3 | 95101 | 95112 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 50. | NW_001092433 | CGAA | 4 | 95333 | 95348 | 16 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 51. | NW_001092433 | TACC | 3 | 95599 | 95610 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 52. | NW_001092433 | TTCG | 3 | 97086 | 97096 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85097365 |
| 53. | NW_001092433 | CAGC | 3 | 97510 | 97521 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85097365 |
| 54. | NW_001092433 | TCAT | 3 | 99927 | 99938 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 55. | NW_001092433 | AAAG | 3 | 102340 | 102350 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 56. | NW_001092433 | AAAG | 3 | 102503 | 102514 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 57. | NW_001092433 | GTGG | 4 | 103260 | 103275 | 16 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 58. | NW_001092433 | CGTT | 3 | 103722 | 103733 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 59. | NW_001092433 | AGAA | 3 | 104417 | 104428 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 60. | NW_001092433 | CGAT | 3 | 104621 | 104632 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 61. | NW_001092433 | TTGC | 3 | 106962 | 106973 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 62. | NW_001092433 | TCGT | 4 | 108564 | 108580 | 17 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 63. | NW_001092433 | TTCC | 3 | 111089 | 111101 | 13 | 0.00% | 50.00% | 0.00% | 50.00% | 85097381 |
| 64. | NW_001092433 | TCTA | 3 | 114922 | 114932 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 65. | NW_001092433 | ACCC | 3 | 115694 | 115705 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 66. | NW_001092433 | CGTT | 3 | 120480 | 120492 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | 85097393 |
| 67. | NW_001092433 | CTAC | 3 | 121386 | 121398 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 68. | NW_001092433 | CCTA | 3 | 121726 | 121738 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 69. | NW_001092433 | CTTG | 3 | 121898 | 121909 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 70. | NW_001092433 | GGTA | 4 | 122099 | 122114 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 71. | NW_001092433 | CTGC | 3 | 128073 | 128085 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 72. | NW_001092433 | TGGG | 3 | 130729 | 130740 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 73. | NW_001092433 | GGAT | 3 | 135724 | 135736 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | 85097409 |
| 74. | NW_001092433 | ACAA | 4 | 136695 | 136710 | 16 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 75. | NW_001092433 | ACTC | 3 | 136955 | 136965 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85097413 |
| 76. | NW_001092433 | ACCC | 3 | 137476 | 137486 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |