List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092431 | AGTC | 4 | 124 | 139 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 2. | NW_001092431 | TCGG | 3 | 178 | 188 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 3. | NW_001092431 | TACC | 5 | 1212 | 1231 | 20 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 4. | NW_001092431 | CATT | 3 | 3200 | 3210 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 5. | NW_001092431 | GACG | 4 | 4337 | 4351 | 15 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 6. | NW_001092431 | TCCC | 3 | 7121 | 7132 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 7. | NW_001092431 | TCCA | 3 | 7701 | 7712 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 8. | NW_001092431 | GACA | 3 | 8922 | 8932 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 9. | NW_001092431 | CGAT | 3 | 13001 | 13011 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 10. | NW_001092431 | TACC | 4 | 13579 | 13594 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 11. | NW_001092431 | CTAC | 3 | 15241 | 15256 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 12. | NW_001092431 | ATGG | 3 | 15708 | 15719 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 13. | NW_001092431 | ATAC | 3 | 20730 | 20741 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001092431 | TAGG | 3 | 20894 | 20904 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 15. | NW_001092431 | GAGG | 3 | 20911 | 20922 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 16. | NW_001092431 | TTTC | 3 | 21258 | 21268 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | 85096978 |
| 17. | NW_001092431 | GAAA | 3 | 25705 | 25715 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 18. | NW_001092431 | GCTT | 3 | 29142 | 29152 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85096982 |
| 19. | NW_001092431 | TTTG | 3 | 29836 | 29847 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 20. | NW_001092431 | TGTC | 3 | 30096 | 30107 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 21. | NW_001092431 | GGGC | 3 | 32272 | 32283 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 22. | NW_001092431 | CAAT | 3 | 33995 | 34006 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | 85096991 |
| 23. | NW_001092431 | GCTA | 3 | 39578 | 39588 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 24. | NW_001092431 | CGTA | 3 | 41086 | 41096 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 25. | NW_001092431 | GCTT | 3 | 45709 | 45719 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85096999 |
| 26. | NW_001092431 | TTCC | 3 | 48510 | 48521 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 27. | NW_001092431 | CTAA | 3 | 49477 | 49488 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 28. | NW_001092431 | CCTT | 3 | 49556 | 49568 | 13 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 29. | NW_001092431 | ACCT | 3 | 52590 | 52601 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 30. | NW_001092431 | TACC | 3 | 52674 | 52685 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 31. | NW_001092431 | TGTT | 3 | 53609 | 53619 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | 85097012 |
| 32. | NW_001092431 | CCCA | 3 | 54611 | 54621 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | 85097012 |
| 33. | NW_001092431 | TTCT | 3 | 55209 | 55220 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85097012 |
| 34. | NW_001092431 | ATAC | 3 | 55506 | 55518 | 13 | 50.00% | 25.00% | 0.00% | 25.00% | 85097012 |
| 35. | NW_001092431 | TGAG | 8 | 55650 | 55680 | 31 | 25.00% | 25.00% | 50.00% | 0.00% | 85097012 |
| 36. | NW_001092431 | TTCA | 3 | 56396 | 56406 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 37. | NW_001092431 | AGAA | 4 | 56451 | 56466 | 16 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 38. | NW_001092431 | GCAG | 3 | 56782 | 56793 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85097016 |
| 39. | NW_001092431 | AGGT | 11 | 60073 | 60116 | 44 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 40. | NW_001092431 | GTTT | 4 | 60135 | 60150 | 16 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 41. | NW_001092431 | AAAC | 3 | 61096 | 61107 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 42. | NW_001092431 | CTCG | 3 | 61539 | 61550 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 43. | NW_001092431 | GGCA | 7 | 61725 | 61755 | 31 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 44. | NW_001092431 | GAAA | 3 | 63137 | 63148 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 45. | NW_001092431 | TGGA | 3 | 64136 | 64146 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85097020 |
| 46. | NW_001092431 | AGGG | 3 | 66554 | 66564 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85097020 |
| 47. | NW_001092431 | CGTC | 3 | 66877 | 66888 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 48. | NW_001092431 | AATG | 3 | 67675 | 67685 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 49. | NW_001092431 | ATGG | 10 | 67713 | 67752 | 40 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 50. | NW_001092431 | GTCG | 6 | 67870 | 67893 | 24 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 51. | NW_001092431 | TATG | 11 | 70752 | 70795 | 44 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 52. | NW_001092431 | GTAT | 26 | 70771 | 70874 | 104 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 53. | NW_001092431 | CCAT | 3 | 72562 | 72576 | 15 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092431 | CCAT | 3 | 72643 | 72654 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 55. | NW_001092431 | TCCC | 4 | 76586 | 76601 | 16 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 56. | NW_001092431 | GGGT | 3 | 79651 | 79663 | 13 | 0.00% | 25.00% | 75.00% | 0.00% | 85097028 |
| 57. | NW_001092431 | CTAT | 3 | 80680 | 80691 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 58. | NW_001092431 | CCAA | 3 | 85598 | 85609 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | 85097035 |
| 59. | NW_001092431 | CCAG | 3 | 88334 | 88345 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 60. | NW_001092431 | CTAG | 6 | 88584 | 88607 | 24 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 61. | NW_001092431 | TTGC | 6 | 88724 | 88747 | 24 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 62. | NW_001092431 | ATGG | 3 | 93288 | 93298 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 63. | NW_001092431 | TGAC | 4 | 94066 | 94085 | 20 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 64. | NW_001092431 | ACCG | 3 | 95487 | 95498 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 65. | NW_001092431 | CCTA | 6 | 96776 | 96798 | 23 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 66. | NW_001092431 | TTCC | 3 | 103014 | 103026 | 13 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 67. | NW_001092431 | AGAA | 3 | 103915 | 103926 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 68. | NW_001092431 | TACC | 5 | 106669 | 106692 | 24 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 69. | NW_001092431 | CCAT | 3 | 106818 | 106829 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 70. | NW_001092431 | TCAT | 3 | 107552 | 107564 | 13 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 71. | NW_001092431 | CATC | 4 | 107603 | 107618 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 72. | NW_001092431 | CCAT | 7 | 107737 | 107764 | 28 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 73. | NW_001092431 | ATCG | 4 | 107798 | 107813 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 74. | NW_001092431 | TTCT | 3 | 108515 | 108526 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85097048 |
| 75. | NW_001092431 | GTTT | 3 | 111458 | 111469 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 76. | NW_001092431 | CAGT | 5 | 111546 | 111564 | 19 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 77. | NW_001092431 | TTTC | 3 | 119829 | 119840 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 78. | NW_001092431 | GGCC | 3 | 120215 | 120225 | 11 | 0.00% | 0.00% | 50.00% | 50.00% | 85097065 |