List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092430 | ATC | 5 | 986 | 1000 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092430 | TCT | 4 | 1406 | 1416 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 3. | NW_001092430 | TCT | 4 | 1474 | 1485 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 4. | NW_001092430 | ACC | 4 | 2213 | 2225 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 5. | NW_001092430 | CAC | 4 | 3555 | 3567 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 6. | NW_001092430 | ACC | 4 | 3593 | 3605 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 7. | NW_001092430 | ACA | 4 | 4263 | 4274 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 8. | NW_001092430 | ACG | 4 | 4275 | 4286 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 9. | NW_001092430 | CAC | 4 | 4291 | 4302 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 10. | NW_001092430 | GCT | 4 | 4749 | 4759 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 11. | NW_001092430 | GCG | 4 | 6978 | 6989 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85096821 |
| 12. | NW_001092430 | TCG | 4 | 7070 | 7081 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096821 |
| 13. | NW_001092430 | GTT | 4 | 7319 | 7331 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | 85096821 |
| 14. | NW_001092430 | AGG | 4 | 7371 | 7382 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 15. | NW_001092430 | CAA | 5 | 7424 | 7438 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 16. | NW_001092430 | ATC | 11 | 7517 | 7549 | 33 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 17. | NW_001092430 | TAT | 4 | 7982 | 7992 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 18. | NW_001092430 | CAG | 5 | 10480 | 10494 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85096825 |
| 19. | NW_001092430 | CAA | 4 | 10507 | 10517 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85096825 |
| 20. | NW_001092430 | GCA | 6 | 10594 | 10611 | 18 | 33.33% | 0.00% | 33.33% | 33.33% | 85096825 |
| 21. | NW_001092430 | TGA | 4 | 10943 | 10953 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85096825 |
| 22. | NW_001092430 | GAT | 4 | 12078 | 12089 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096825 |
| 23. | NW_001092430 | CGG | 4 | 12121 | 12132 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85096825 |
| 24. | NW_001092430 | CTC | 4 | 13124 | 13135 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096830 |
| 25. | NW_001092430 | CTT | 4 | 13439 | 13450 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096830 |
| 26. | NW_001092430 | TTG | 4 | 17916 | 17926 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 27. | NW_001092430 | TTA | 4 | 19136 | 19147 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 28. | NW_001092430 | ACC | 4 | 20011 | 20025 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85096835 |
| 29. | NW_001092430 | TCC | 4 | 20204 | 20215 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096835 |
| 30. | NW_001092430 | AGC | 4 | 20652 | 20663 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096835 |
| 31. | NW_001092430 | AAC | 7 | 20664 | 20684 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | 85096835 |
| 32. | NW_001092430 | AGC | 4 | 21781 | 21795 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85096839 |
| 33. | NW_001092430 | ACA | 5 | 21799 | 21813 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85096839 |
| 34. | NW_001092430 | CAC | 8 | 21822 | 21845 | 24 | 33.33% | 0.00% | 0.00% | 66.67% | 85096839 |
| 35. | NW_001092430 | CTC | 5 | 21901 | 21915 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85096839 |
| 36. | NW_001092430 | CTC | 4 | 21979 | 21991 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85096839 |
| 37. | NW_001092430 | GCT | 4 | 22802 | 22813 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096839 |
| 38. | NW_001092430 | ACA | 5 | 26766 | 26780 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85096844 |
| 39. | NW_001092430 | GCA | 5 | 26955 | 26969 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85096844 |
| 40. | NW_001092430 | CAC | 4 | 27160 | 27170 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85096844 |
| 41. | NW_001092430 | TTC | 4 | 27416 | 27427 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096844 |
| 42. | NW_001092430 | AAG | 6 | 28551 | 28568 | 18 | 66.67% | 0.00% | 33.33% | 0.00% | 85096844 |
| 43. | NW_001092430 | CCA | 4 | 30403 | 30414 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 44. | NW_001092430 | ATC | 4 | 31071 | 31082 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85096848 |
| 45. | NW_001092430 | AAC | 4 | 31684 | 31695 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85096848 |
| 46. | NW_001092430 | GAG | 5 | 32736 | 32750 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85096848 |
| 47. | NW_001092430 | TGC | 4 | 32987 | 32998 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096848 |
| 48. | NW_001092430 | TCA | 4 | 33202 | 33213 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85096848 |
| 49. | NW_001092430 | CAA | 4 | 33299 | 33310 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85096848 |
| 50. | NW_001092430 | AGA | 7 | 33526 | 33546 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | 85096848 |
| 51. | NW_001092430 | TAT | 4 | 35429 | 35440 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 52. | NW_001092430 | TTA | 4 | 36995 | 37006 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 53. | NW_001092430 | TAG | 4 | 37173 | 37184 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 54. | NW_001092430 | ATA | 4 | 37357 | 37367 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 55. | NW_001092430 | TAC | 4 | 37382 | 37393 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 56. | NW_001092430 | TAA | 4 | 37735 | 37747 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 57. | NW_001092430 | TAG | 4 | 38965 | 38976 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 58. | NW_001092430 | TAT | 7 | 39229 | 39249 | 21 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 59. | NW_001092430 | TAT | 4 | 39253 | 39264 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 60. | NW_001092430 | TAA | 4 | 39670 | 39681 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 61. | NW_001092430 | TTA | 4 | 39708 | 39719 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 62. | NW_001092430 | CAG | 7 | 40855 | 40875 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 63. | NW_001092430 | TCG | 5 | 41186 | 41200 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 64. | NW_001092430 | GCA | 4 | 41285 | 41296 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 65. | NW_001092430 | GCA | 4 | 41463 | 41474 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 66. | NW_001092430 | CGA | 4 | 41790 | 41800 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 67. | NW_001092430 | TCA | 5 | 42370 | 42384 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85096852 |
| 68. | NW_001092430 | CCA | 4 | 42382 | 42395 | 14 | 33.33% | 0.00% | 0.00% | 66.67% | 85096852 |
| 69. | NW_001092430 | CTC | 4 | 45039 | 45050 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 70. | NW_001092430 | CAA | 4 | 45436 | 45447 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85096857 |
| 71. | NW_001092430 | AGA | 4 | 46595 | 46606 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85096857 |
| 72. | NW_001092430 | CTT | 4 | 46747 | 46758 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096857 |
| 73. | NW_001092430 | ACC | 4 | 48383 | 48394 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 74. | NW_001092430 | CCG | 11 | 48628 | 48660 | 33 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 75. | NW_001092430 | ACC | 11 | 48900 | 48933 | 34 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 76. | NW_001092430 | GCC | 5 | 49147 | 49161 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85096861 |
| 77. | NW_001092430 | CAG | 4 | 49171 | 49182 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096861 |
| 78. | NW_001092430 | GCC | 4 | 49225 | 49236 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85096861 |
| 79. | NW_001092430 | CGA | 4 | 50578 | 50588 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 80. | NW_001092430 | AGG | 4 | 50931 | 50941 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 81. | NW_001092430 | CAT | 5 | 51636 | 51651 | 16 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 82. | NW_001092430 | GGC | 4 | 53016 | 53027 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85096865 |
| 83. | NW_001092430 | GAA | 6 | 53218 | 53235 | 18 | 66.67% | 0.00% | 33.33% | 0.00% | 85096865 |
| 84. | NW_001092430 | CCA | 4 | 55746 | 55757 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85096870 |
| 85. | NW_001092430 | CTC | 5 | 57031 | 57045 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 86. | NW_001092430 | CCT | 5 | 58181 | 58195 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85096874 |
| 87. | NW_001092430 | CGG | 4 | 58572 | 58583 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85096874 |
| 88. | NW_001092430 | TGC | 4 | 59070 | 59081 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096874 |
| 89. | NW_001092430 | GGA | 8 | 59085 | 59108 | 24 | 33.33% | 0.00% | 66.67% | 0.00% | 85096874 |
| 90. | NW_001092430 | AGC | 4 | 59158 | 59169 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096874 |
| 91. | NW_001092430 | GAA | 7 | 59173 | 59194 | 22 | 66.67% | 0.00% | 33.33% | 0.00% | 85096874 |
| 92. | NW_001092430 | ACC | 4 | 60079 | 60090 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85096874 |
| 93. | NW_001092430 | CGA | 4 | 60375 | 60385 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85096874 |
| 94. | NW_001092430 | GAG | 4 | 60589 | 60601 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85096874 |
| 95. | NW_001092430 | AGG | 4 | 60719 | 60729 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85096874 |
| 96. | NW_001092430 | CTT | 4 | 61678 | 61688 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 97. | NW_001092430 | GTC | 4 | 62054 | 62066 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 98. | NW_001092430 | CAC | 4 | 64112 | 64123 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 99. | NW_001092430 | TAC | 4 | 65987 | 65999 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 100. | NW_001092430 | TAG | 4 | 68621 | 68632 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096882 |
| 101. | NW_001092430 | CGT | 5 | 68664 | 68678 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85096882 |
| 102. | NW_001092430 | TGG | 4 | 70017 | 70028 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096882 |
| 103. | NW_001092430 | GAA | 4 | 72827 | 72839 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 104. | NW_001092430 | TGA | 7 | 72878 | 72898 | 21 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 105. | NW_001092430 | TTC | 4 | 73396 | 73407 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 106. | NW_001092430 | AGG | 4 | 73506 | 73517 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 107. | NW_001092430 | ACG | 4 | 76530 | 76540 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 108. | NW_001092430 | CTC | 6 | 77097 | 77113 | 17 | 0.00% | 33.33% | 0.00% | 66.67% | 85096890 |
| 109. | NW_001092430 | CCT | 5 | 77117 | 77131 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85096890 |
| 110. | NW_001092430 | GTT | 8 | 77431 | 77454 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85096890 |
| 111. | NW_001092430 | CTC | 4 | 79745 | 79756 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096894 |
| 112. | NW_001092430 | TCG | 4 | 82226 | 82237 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 113. | NW_001092430 | GGT | 4 | 82250 | 82261 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 114. | NW_001092430 | GAT | 4 | 82398 | 82408 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 115. | NW_001092430 | GGA | 4 | 82620 | 82631 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 116. | NW_001092430 | GTG | 4 | 87007 | 87017 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 117. | NW_001092430 | AAG | 4 | 88284 | 88295 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85096905 |
| 118. | NW_001092430 | TCC | 4 | 89640 | 89651 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096905 |
| 119. | NW_001092430 | CTA | 5 | 91348 | 91361 | 14 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 120. | NW_001092430 | CTC | 4 | 91887 | 91898 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 121. | NW_001092430 | TCG | 4 | 94834 | 94844 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 122. | NW_001092430 | CAA | 4 | 98509 | 98520 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 123. | NW_001092430 | GAT | 4 | 98680 | 98691 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 124. | NW_001092430 | ATG | 4 | 99095 | 99105 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 125. | NW_001092430 | AGC | 4 | 99883 | 99894 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096918 |
| 126. | NW_001092430 | CAT | 4 | 100067 | 100078 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85096918 |
| 127. | NW_001092430 | CTT | 4 | 102303 | 102314 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096922 |
| 128. | NW_001092430 | TCC | 5 | 104059 | 104073 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 129. | NW_001092430 | GTC | 5 | 104093 | 104107 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 130. | NW_001092430 | GGC | 6 | 104266 | 104283 | 18 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 131. | NW_001092430 | CAC | 4 | 105930 | 105940 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85096926 |