List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092401 | TTGC | 3 | 319 | 329 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85094490 |
| 2. | NW_001092401 | GTTT | 3 | 2645 | 2656 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 3. | NW_001092401 | TAGC | 3 | 3204 | 3215 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 4. | NW_001092401 | GGGA | 3 | 3515 | 3525 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 5. | NW_001092401 | TTGC | 3 | 4185 | 4196 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001092401 | TGGG | 3 | 5910 | 5921 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85094494 |
| 7. | NW_001092401 | TCAT | 3 | 7913 | 7923 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | 85094494 |
| 8. | NW_001092401 | TGGA | 3 | 9843 | 9855 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 9. | NW_001092401 | GAGC | 3 | 11132 | 11142 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85094498 |
| 10. | NW_001092401 | GTCC | 3 | 12053 | 12064 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85094498 |
| 11. | NW_001092401 | GACT | 3 | 17787 | 17799 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 12. | NW_001092401 | CTCC | 3 | 20049 | 20059 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | 85094506 |
| 13. | NW_001092401 | CGGA | 3 | 21051 | 21062 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85094509 |
| 14. | NW_001092401 | ACGG | 3 | 21079 | 21090 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85094509 |
| 15. | NW_001092401 | GGAC | 3 | 21347 | 21359 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | 85094509 |
| 16. | NW_001092401 | TCTT | 3 | 21391 | 21403 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | 85094509 |
| 17. | NW_001092401 | TGAG | 3 | 21519 | 21530 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85094509 |
| 18. | NW_001092401 | GAAG | 3 | 24460 | 24470 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 19. | NW_001092401 | AATG | 3 | 28349 | 28360 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 20. | NW_001092401 | ACCT | 3 | 28601 | 28612 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 21. | NW_001092401 | GCCA | 3 | 30511 | 30522 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 85094525 |
| 22. | NW_001092401 | CATA | 12 | 37410 | 37456 | 47 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 23. | NW_001092401 | CGGA | 3 | 39731 | 39741 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85094535 |
| 24. | NW_001092401 | AGGA | 3 | 40918 | 40930 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 25. | NW_001092401 | GCCT | 4 | 41138 | 41153 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 26. | NW_001092401 | CTAC | 4 | 41945 | 41960 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 27. | NW_001092401 | AGTT | 4 | 42049 | 42064 | 16 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 28. | NW_001092401 | AAAG | 3 | 42942 | 42953 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 29. | NW_001092401 | GAAT | 3 | 44011 | 44022 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 30. | NW_001092401 | CCGT | 3 | 44135 | 44145 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 31. | NW_001092401 | CTTT | 3 | 46189 | 46200 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 32. | NW_001092401 | GACA | 4 | 49177 | 49192 | 16 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 33. | NW_001092401 | TAAT | 3 | 49271 | 49282 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 34. | NW_001092401 | GGAA | 3 | 49373 | 49383 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 35. | NW_001092401 | GGAT | 4 | 49588 | 49603 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 36. | NW_001092401 | GGAA | 3 | 49634 | 49645 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 37. | NW_001092401 | GGAT | 5 | 49704 | 49723 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 38. | NW_001092401 | CCCT | 4 | 50269 | 50283 | 15 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 39. | NW_001092401 | CACC | 3 | 50768 | 50779 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 40. | NW_001092401 | CTCC | 3 | 52800 | 52810 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 41. | NW_001092401 | CCGC | 4 | 56617 | 56632 | 16 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 42. | NW_001092401 | GCAG | 3 | 58925 | 58936 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85094558 |
| 43. | NW_001092401 | GTAG | 4 | 59694 | 59709 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 44. | NW_001092401 | AGGC | 5 | 59894 | 59917 | 24 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 45. | NW_001092401 | GCCC | 3 | 60343 | 60353 | 11 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 46. | NW_001092401 | TCCA | 4 | 61554 | 61569 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | 85094563 |
| 47. | NW_001092401 | GTAG | 3 | 62396 | 62407 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 48. | NW_001092401 | CCAC | 4 | 63339 | 63353 | 15 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 49. | NW_001092401 | AGGG | 3 | 68131 | 68143 | 13 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 50. | NW_001092401 | AATC | 4 | 68904 | 68919 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 51. | NW_001092401 | CCAT | 3 | 74245 | 74256 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 52. | NW_001092401 | CCTA | 4 | 74497 | 74512 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 53. | NW_001092401 | GCAG | 4 | 74568 | 74583 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 54. | NW_001092401 | GACG | 3 | 74802 | 74817 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 55. | NW_001092401 | GTAC | 3 | 78231 | 78242 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 56. | NW_001092401 | CAGG | 3 | 78265 | 78276 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 57. | NW_001092401 | GTTT | 4 | 78485 | 78500 | 16 | 0.00% | 75.00% | 25.00% | 0.00% | 85094578 |
| 58. | NW_001092401 | AATC | 3 | 79658 | 79668 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | 85094578 |
| 59. | NW_001092401 | ATGT | 3 | 85839 | 85849 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 60. | NW_001092401 | AAGA | 3 | 88046 | 88056 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 61. | NW_001092401 | CATC | 6 | 88188 | 88211 | 24 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 62. | NW_001092401 | TTCC | 3 | 88551 | 88561 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 63. | NW_001092401 | AGTC | 3 | 97368 | 97378 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 64. | NW_001092401 | TCTT | 3 | 97409 | 97420 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 65. | NW_001092401 | AAAG | 3 | 100741 | 100753 | 13 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 66. | NW_001092401 | AGGT | 3 | 100798 | 100809 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 67. | NW_001092401 | GGAA | 3 | 101040 | 101050 | 11 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 68. | NW_001092401 | CCAT | 3 | 101213 | 101223 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 69. | NW_001092401 | CAAG | 3 | 102794 | 102806 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 70. | NW_001092401 | ATCA | 9 | 103121 | 103156 | 36 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 71. | NW_001092401 | CAGA | 5 | 103462 | 103480 | 19 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 72. | NW_001092401 | GTCT | 3 | 103574 | 103584 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 73. | NW_001092401 | TCTT | 3 | 103928 | 103940 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | 85094611 |
| 74. | NW_001092401 | TAGG | 3 | 107855 | 107866 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 75. | NW_001092401 | TTGG | 3 | 110590 | 110601 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 76. | NW_001092401 | GGCA | 3 | 111783 | 111793 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85094620 |
| 77. | NW_001092401 | GTTT | 3 | 114079 | 114090 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | 85094624 |
| 78. | NW_001092401 | CTCG | 3 | 115551 | 115562 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85094624 |
| 79. | NW_001092401 | AAGC | 3 | 116655 | 116665 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 80. | NW_001092401 | GCAG | 3 | 117387 | 117398 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 85094628 |
| 81. | NW_001092401 | AACC | 3 | 118938 | 118948 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 82. | NW_001092401 | CTGA | 4 | 124384 | 124399 | 16 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 83. | NW_001092401 | TGCC | 8 | 124838 | 124869 | 32 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 84. | NW_001092401 | GGGA | 3 | 125295 | 125305 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 85. | NW_001092401 | TCGC | 3 | 125542 | 125554 | 13 | 0.00% | 25.00% | 25.00% | 50.00% | 85094637 |
| 86. | NW_001092401 | GAGG | 3 | 127062 | 127073 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 87. | NW_001092401 | GTCA | 3 | 127469 | 127479 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 88. | NW_001092401 | GGGA | 3 | 127525 | 127536 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 89. | NW_001092401 | TCTT | 4 | 129479 | 129494 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 90. | NW_001092401 | TGGG | 3 | 130400 | 130411 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 91. | NW_001092401 | TCGG | 5 | 131099 | 131118 | 20 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 92. | NW_001092401 | CGGA | 4 | 131225 | 131239 | 15 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 93. | NW_001092401 | TACA | 3 | 131926 | 131937 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 94. | NW_001092401 | CCGA | 3 | 132004 | 132014 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 95. | NW_001092401 | GATG | 9 | 132307 | 132341 | 35 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 96. | NW_001092401 | TGCC | 8 | 132999 | 133031 | 33 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 97. | NW_001092401 | TGGA | 3 | 135517 | 135527 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85094641 |
| 98. | NW_001092401 | TGCT | 3 | 138356 | 138368 | 13 | 0.00% | 50.00% | 25.00% | 25.00% | 85094645 |
| 99. | NW_001092401 | TGGA | 3 | 139114 | 139124 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85094645 |
| 100. | NW_001092401 | ATGG | 4 | 146876 | 146891 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 101. | NW_001092401 | ACGT | 3 | 150498 | 150510 | 13 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 102. | NW_001092401 | GCGT | 3 | 151238 | 151249 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85094661 |
| 103. | NW_001092401 | CGAG | 3 | 156470 | 156480 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 104. | NW_001092401 | GCTG | 4 | 158714 | 158728 | 15 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 105. | NW_001092401 | CCGG | 3 | 159858 | 159869 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 106. | NW_001092401 | CCCA | 3 | 160783 | 160793 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 107. | NW_001092401 | AACA | 3 | 161638 | 161648 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 108. | NW_001092401 | TTCC | 3 | 161879 | 161890 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 109. | NW_001092401 | GCGT | 3 | 163350 | 163361 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85094673 |
| 110. | NW_001092401 | CAGG | 3 | 169154 | 169164 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | 85094677 |
| 111. | NW_001092401 | CTGG | 4 | 169873 | 169888 | 16 | 0.00% | 25.00% | 50.00% | 25.00% | 85094682 |
| 112. | NW_001092401 | CTTT | 3 | 171699 | 171710 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85094685 |
| 113. | NW_001092401 | ATGG | 4 | 172833 | 172848 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 114. | NW_001092401 | TCCC | 3 | 173327 | 173337 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 115. | NW_001092401 | TCCT | 3 | 173339 | 173350 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 116. | NW_001092401 | AGGG | 4 | 173627 | 173642 | 16 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 117. | NW_001092401 | GAGG | 3 | 174810 | 174820 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85094689 |
| 118. | NW_001092401 | CTGA | 3 | 177717 | 177728 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 119. | NW_001092401 | AGTG | 3 | 178379 | 178389 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 120. | NW_001092401 | TTCA | 3 | 179832 | 179843 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 121. | NW_001092401 | AAGT | 3 | 180568 | 180580 | 13 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 122. | NW_001092401 | GAAA | 3 | 180849 | 180860 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 123. | NW_001092401 | ACCG | 3 | 181033 | 181044 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 124. | NW_001092401 | GGCG | 3 | 182387 | 182398 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | 85094693 |
| 125. | NW_001092401 | CCTC | 3 | 183965 | 183976 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 126. | NW_001092401 | CATC | 3 | 184093 | 184104 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 127. | NW_001092401 | TACC | 3 | 192256 | 192267 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 128. | NW_001092401 | AGTC | 3 | 196689 | 196699 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 129. | NW_001092401 | AGGT | 4 | 199539 | 199554 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 130. | NW_001092401 | AGCG | 3 | 199969 | 199979 | 11 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 131. | NW_001092401 | GTTT | 3 | 203096 | 203106 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 132. | NW_001092401 | TGGA | 3 | 204662 | 204672 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 133. | NW_001092401 | CCGA | 3 | 204793 | 204803 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 134. | NW_001092401 | TTCC | 3 | 207177 | 207188 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85094735 |
| 135. | NW_001092401 | TACC | 3 | 208609 | 208619 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 136. | NW_001092401 | AACA | 3 | 208662 | 208674 | 13 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 137. | NW_001092401 | AGCA | 3 | 209031 | 209041 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 138. | NW_001092401 | TAGT | 3 | 210189 | 210200 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 139. | NW_001092401 | GGTG | 3 | 210458 | 210469 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85094739 |
| 140. | NW_001092401 | ATAG | 3 | 212311 | 212321 | 11 | 50.00% | 25.00% | 25.00% | 0.00% | 85094739 |
| 141. | NW_001092401 | GGAG | 3 | 212677 | 212688 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 142. | NW_001092401 | TTTC | 3 | 218913 | 218923 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 143. | NW_001092401 | CCCT | 3 | 219637 | 219648 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 144. | NW_001092401 | CTTT | 3 | 221195 | 221207 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 145. | NW_001092401 | TACC | 3 | 222562 | 222573 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 146. | NW_001092401 | CCTT | 3 | 223668 | 223678 | 11 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |