List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092396 | CTT | 4 | 759 | 770 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092396 | TAT | 4 | 3129 | 3140 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092396 | TAA | 4 | 3515 | 3525 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092396 | TAT | 4 | 3744 | 3755 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092396 | TAT | 4 | 3785 | 3796 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092396 | AGG | 4 | 3799 | 3810 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 7. | NW_001092396 | CCA | 5 | 4664 | 4678 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85093719 |
| 8. | NW_001092396 | CGA | 4 | 10325 | 10336 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 9. | NW_001092396 | TCT | 4 | 13576 | 13587 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85093727 |
| 10. | NW_001092396 | AGG | 4 | 14202 | 14213 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85093727 |
| 11. | NW_001092396 | GAA | 4 | 14344 | 14354 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85093727 |
| 12. | NW_001092396 | GGT | 9 | 14368 | 14394 | 27 | 0.00% | 33.33% | 66.67% | 0.00% | 85093727 |
| 13. | NW_001092396 | GAA | 4 | 16861 | 16872 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85093731 |
| 14. | NW_001092396 | TGT | 5 | 17808 | 17822 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092396 | CTC | 4 | 19713 | 19724 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 16. | NW_001092396 | TGT | 4 | 19942 | 19953 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 17. | NW_001092396 | CCG | 5 | 20456 | 20476 | 21 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 18. | NW_001092396 | ACA | 4 | 21288 | 21299 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 19. | NW_001092396 | GGA | 4 | 22066 | 22077 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85093738 |
| 20. | NW_001092396 | TAT | 4 | 22088 | 22099 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | 85093738 |
| 21. | NW_001092396 | TGA | 4 | 26855 | 26866 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85093742 |
| 22. | NW_001092396 | AGA | 5 | 27743 | 27756 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 23. | NW_001092396 | TGG | 4 | 32539 | 32551 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 24. | NW_001092396 | CAT | 5 | 35053 | 35067 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85093752 |
| 25. | NW_001092396 | GAT | 9 | 35165 | 35191 | 27 | 33.33% | 33.33% | 33.33% | 0.00% | 85093752 |
| 26. | NW_001092396 | ACA | 4 | 35719 | 35730 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001092396 | TCG | 4 | 37138 | 37149 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85093756 |
| 28. | NW_001092396 | GCT | 5 | 37834 | 37848 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85093756 |
| 29. | NW_001092396 | GCC | 4 | 37919 | 37929 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85093756 |
| 30. | NW_001092396 | TGG | 4 | 38502 | 38514 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85093756 |
| 31. | NW_001092396 | ACA | 4 | 39009 | 39020 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85093756 |
| 32. | NW_001092396 | GTA | 4 | 39047 | 39058 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85093756 |
| 33. | NW_001092396 | GCC | 4 | 39473 | 39483 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85093756 |
| 34. | NW_001092396 | CCT | 4 | 39692 | 39703 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85093756 |
| 35. | NW_001092396 | GCT | 4 | 41182 | 41193 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85093756 |
| 36. | NW_001092396 | CCT | 4 | 41262 | 41272 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85093756 |
| 37. | NW_001092396 | GTC | 4 | 41985 | 41996 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85093756 |
| 38. | NW_001092396 | TGT | 7 | 42382 | 42402 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85093756 |
| 39. | NW_001092396 | GGA | 4 | 44248 | 44259 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85093756 |
| 40. | NW_001092396 | GTT | 4 | 44607 | 44618 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85093756 |
| 41. | NW_001092396 | GTC | 4 | 44933 | 44943 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 42. | NW_001092396 | CAA | 6 | 45523 | 45540 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 43. | NW_001092396 | AGA | 9 | 46554 | 46579 | 26 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 44. | NW_001092396 | GAA | 9 | 46761 | 46787 | 27 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 45. | NW_001092396 | TCT | 4 | 47821 | 47831 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 46. | NW_001092396 | GAA | 4 | 50186 | 50196 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 47. | NW_001092396 | ACA | 5 | 51275 | 51289 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 48. | NW_001092396 | GGC | 7 | 52084 | 52104 | 21 | 0.00% | 0.00% | 66.67% | 33.33% | 85093763 |
| 49. | NW_001092396 | GCA | 4 | 56937 | 56948 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85093771 |
| 50. | NW_001092396 | CCA | 4 | 58506 | 58516 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 51. | NW_001092396 | CTG | 4 | 61163 | 61174 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85093775 |
| 52. | NW_001092396 | GCC | 4 | 63170 | 63181 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85093779 |
| 53. | NW_001092396 | ACA | 4 | 63330 | 63341 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85093779 |
| 54. | NW_001092396 | AAC | 4 | 68010 | 68021 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85093787 |
| 55. | NW_001092396 | TCG | 4 | 69885 | 69895 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85093791 |
| 56. | NW_001092396 | TCA | 4 | 69984 | 69996 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | 85093791 |
| 57. | NW_001092396 | GCC | 7 | 70367 | 70387 | 21 | 0.00% | 0.00% | 33.33% | 66.67% | 85093791 |
| 58. | NW_001092396 | AGC | 4 | 72632 | 72642 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 59. | NW_001092396 | TCA | 5 | 73067 | 73081 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |