List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092341 | ACC | 4 | 685 | 696 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 2. | NW_001092341 | GTG | 9 | 956 | 982 | 27 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 3. | NW_001092341 | CAC | 4 | 1642 | 1653 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 4. | NW_001092341 | TCT | 4 | 4851 | 4862 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 5. | NW_001092341 | CTC | 4 | 5951 | 5963 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 6. | NW_001092341 | CTC | 4 | 6153 | 6164 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091715 |
| 7. | NW_001092341 | CAA | 8 | 6365 | 6388 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85091715 |
| 8. | NW_001092341 | CGG | 4 | 6649 | 6660 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85091715 |
| 9. | NW_001092341 | ACG | 4 | 7487 | 7497 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85091715 |
| 10. | NW_001092341 | AGA | 4 | 8299 | 8310 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85091715 |
| 11. | NW_001092341 | GGT | 4 | 8702 | 8713 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85091715 |
| 12. | NW_001092341 | TCT | 5 | 10083 | 10097 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85091717 |
| 13. | NW_001092341 | TCC | 5 | 10098 | 10112 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85091717 |
| 14. | NW_001092341 | GTT | 11 | 10283 | 10314 | 32 | 0.00% | 66.67% | 33.33% | 0.00% | 85091717 |
| 15. | NW_001092341 | AGA | 12 | 10340 | 10375 | 36 | 66.67% | 0.00% | 33.33% | 0.00% | 85091717 |
| 16. | NW_001092341 | TGG | 5 | 10723 | 10738 | 16 | 0.00% | 33.33% | 66.67% | 0.00% | 85091717 |
| 17. | NW_001092341 | TGT | 7 | 10880 | 10900 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85091717 |
| 18. | NW_001092341 | CTG | 4 | 12125 | 12136 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091717 |
| 19. | NW_001092341 | TGT | 5 | 12627 | 12641 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85091717 |
| 20. | NW_001092341 | TGC | 4 | 12639 | 12650 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091717 |
| 21. | NW_001092341 | GCT | 4 | 13038 | 13049 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091717 |
| 22. | NW_001092341 | GTT | 5 | 13050 | 13064 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85091717 |
| 23. | NW_001092341 | GTG | 4 | 13778 | 13788 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 24. | NW_001092341 | TTC | 4 | 16445 | 16456 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85091719 |
| 25. | NW_001092341 | CAT | 4 | 18230 | 18241 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 26. | NW_001092341 | CAA | 4 | 21968 | 21979 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85091723 |
| 27. | NW_001092341 | ACC | 4 | 22900 | 22911 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091723 |
| 28. | NW_001092341 | CCA | 4 | 22961 | 22972 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091723 |
| 29. | NW_001092341 | GGA | 4 | 23547 | 23558 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091723 |
| 30. | NW_001092341 | ATC | 4 | 24239 | 24250 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 31. | NW_001092341 | TCA | 6 | 24282 | 24299 | 18 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 32. | NW_001092341 | TCT | 5 | 24429 | 24443 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 33. | NW_001092341 | CAC | 4 | 24626 | 24636 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85091725 |
| 34. | NW_001092341 | CTG | 4 | 24692 | 24703 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091725 |
| 35. | NW_001092341 | CCT | 6 | 26141 | 26158 | 18 | 0.00% | 33.33% | 0.00% | 66.67% | 85091727 |
| 36. | NW_001092341 | CAT | 4 | 26178 | 26189 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85091727 |
| 37. | NW_001092341 | AGT | 4 | 28636 | 28647 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 38. | NW_001092341 | CAC | 4 | 30237 | 30247 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85091729 |
| 39. | NW_001092341 | CGC | 4 | 32147 | 32157 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85091729 |
| 40. | NW_001092341 | CCA | 4 | 32594 | 32605 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091729 |
| 41. | NW_001092341 | AGA | 11 | 34009 | 34041 | 33 | 66.67% | 0.00% | 33.33% | 0.00% | 85091731 |
| 42. | NW_001092341 | AGG | 5 | 34042 | 34056 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85091731 |
| 43. | NW_001092341 | TGC | 9 | 34140 | 34166 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85091731 |
| 44. | NW_001092341 | ACC | 6 | 34705 | 34722 | 18 | 33.33% | 0.00% | 0.00% | 66.67% | 85091731 |
| 45. | NW_001092341 | CAG | 4 | 34875 | 34886 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091731 |
| 46. | NW_001092341 | GGT | 8 | 35146 | 35170 | 25 | 0.00% | 33.33% | 66.67% | 0.00% | 85091731 |
| 47. | NW_001092341 | CTT | 4 | 38643 | 38654 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 48. | NW_001092341 | CAC | 4 | 40191 | 40202 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 49. | NW_001092341 | ATC | 4 | 40388 | 40399 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 50. | NW_001092341 | CAT | 4 | 41077 | 41088 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85091733 |
| 51. | NW_001092341 | GGA | 4 | 41594 | 41605 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091733 |
| 52. | NW_001092341 | TGG | 4 | 41660 | 41671 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85091733 |
| 53. | NW_001092341 | GGA | 4 | 41700 | 41711 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091733 |
| 54. | NW_001092341 | CTC | 7 | 41868 | 41889 | 22 | 0.00% | 33.33% | 0.00% | 66.67% | 85091733 |
| 55. | NW_001092341 | GAG | 4 | 43068 | 43078 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85091733 |
| 56. | NW_001092341 | CGC | 4 | 44135 | 44147 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 57. | NW_001092341 | TTC | 4 | 44562 | 44573 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092341 | CTG | 4 | 44816 | 44827 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 59. | NW_001092341 | CAT | 4 | 44922 | 44933 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 60. | NW_001092341 | CTC | 4 | 45244 | 45255 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 61. | NW_001092341 | GTG | 9 | 45317 | 45344 | 28 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 62. | NW_001092341 | TTG | 4 | 45376 | 45387 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 63. | NW_001092341 | TTG | 74 | 45476 | 45698 | 223 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 64. | NW_001092341 | GTT | 42 | 45705 | 45830 | 126 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 65. | NW_001092341 | GCG | 4 | 50090 | 50101 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85091735 |
| 66. | NW_001092341 | TGG | 4 | 51624 | 51635 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 67. | NW_001092341 | CTA | 4 | 53121 | 53131 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 68. | NW_001092341 | TCA | 4 | 54200 | 54211 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85091737 |
| 69. | NW_001092341 | CGC | 4 | 56352 | 56363 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85091737 |
| 70. | NW_001092341 | GAG | 11 | 56595 | 56627 | 33 | 33.33% | 0.00% | 66.67% | 0.00% | 85091737 |
| 71. | NW_001092341 | CAG | 4 | 56633 | 56644 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091737 |
| 72. | NW_001092341 | GCA | 4 | 56701 | 56712 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091737 |
| 73. | NW_001092341 | CAC | 8 | 59153 | 59175 | 23 | 33.33% | 0.00% | 0.00% | 66.67% | 85091739 |
| 74. | NW_001092341 | TGT | 4 | 60834 | 60845 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 75. | NW_001092341 | GTT | 5 | 62212 | 62226 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85091741 |
| 76. | NW_001092341 | ATC | 4 | 64798 | 64808 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 77. | NW_001092341 | AGG | 5 | 66082 | 66096 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85091743 |
| 78. | NW_001092341 | TTG | 4 | 67319 | 67329 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 79. | NW_001092341 | TCT | 4 | 69686 | 69696 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 80. | NW_001092341 | ACG | 4 | 70177 | 70188 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091747 |
| 81. | NW_001092341 | GCA | 4 | 72050 | 72061 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 82. | NW_001092341 | ACG | 12 | 72379 | 72412 | 34 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 83. | NW_001092341 | GAA | 12 | 73457 | 73492 | 36 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 84. | NW_001092341 | ACA | 4 | 74110 | 74120 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 85. | NW_001092341 | CAA | 4 | 74187 | 74199 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 86. | NW_001092341 | ACA | 8 | 75027 | 75050 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 87. | NW_001092341 | GTC | 4 | 75188 | 75199 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 88. | NW_001092341 | TCA | 6 | 75363 | 75381 | 19 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 89. | NW_001092341 | CTG | 4 | 75527 | 75539 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 90. | NW_001092341 | GCT | 4 | 76279 | 76289 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85091749 |
| 91. | NW_001092341 | CCG | 4 | 77016 | 77030 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85091749 |
| 92. | NW_001092341 | GAG | 9 | 77686 | 77711 | 26 | 33.33% | 0.00% | 66.67% | 0.00% | 85091749 |
| 93. | NW_001092341 | CTT | 5 | 78000 | 78014 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 94. | NW_001092341 | TCA | 4 | 79267 | 79279 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | 85091751 |
| 95. | NW_001092341 | GTC | 4 | 80388 | 80399 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091751 |
| 96. | NW_001092341 | TGC | 4 | 80481 | 80492 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091751 |
| 97. | NW_001092341 | CTG | 4 | 80831 | 80842 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091751 |
| 98. | NW_001092341 | TGA | 4 | 80874 | 80885 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091751 |
| 99. | NW_001092341 | GGC | 4 | 82881 | 82893 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85091753 |
| 100. | NW_001092341 | GCT | 5 | 83395 | 83409 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85091753 |
| 101. | NW_001092341 | GGT | 4 | 84891 | 84902 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 102. | NW_001092341 | TCG | 4 | 85676 | 85687 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 103. | NW_001092341 | CTG | 4 | 85921 | 85932 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 104. | NW_001092341 | GAG | 4 | 88496 | 88507 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091755 |
| 105. | NW_001092341 | TGC | 7 | 89809 | 89829 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85091757 |
| 106. | NW_001092341 | CGG | 4 | 89886 | 89897 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85091757 |
| 107. | NW_001092341 | TCC | 4 | 89908 | 89918 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85091757 |
| 108. | NW_001092341 | TCC | 9 | 89925 | 89953 | 29 | 0.00% | 33.33% | 0.00% | 66.67% | 85091757 |
| 109. | NW_001092341 | TCC | 5 | 90146 | 90162 | 17 | 0.00% | 33.33% | 0.00% | 66.67% | 85091757 |
| 110. | NW_001092341 | TGG | 7 | 90578 | 90598 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85091757 |
| 111. | NW_001092341 | TGA | 4 | 90596 | 90607 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091757 |
| 112. | NW_001092341 | TGG | 4 | 90602 | 90613 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85091757 |
| 113. | NW_001092341 | TGC | 4 | 90765 | 90776 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091757 |
| 114. | NW_001092341 | GAT | 6 | 90838 | 90856 | 19 | 33.33% | 33.33% | 33.33% | 0.00% | 85091757 |
| 115. | NW_001092341 | TGG | 4 | 91711 | 91722 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 116. | NW_001092341 | TTC | 4 | 92262 | 92273 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85091759 |
| 117. | NW_001092341 | GCT | 4 | 94676 | 94687 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 118. | NW_001092341 | ACA | 4 | 94966 | 94977 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 119. | NW_001092341 | AGC | 4 | 95103 | 95114 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 120. | NW_001092341 | AGC | 4 | 95958 | 95969 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 121. | NW_001092341 | ACA | 4 | 97103 | 97113 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 122. | NW_001092341 | ACA | 4 | 99617 | 99627 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 123. | NW_001092341 | GGA | 4 | 100866 | 100877 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091761 |
| 124. | NW_001092341 | CTT | 4 | 101170 | 101180 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 125. | NW_001092341 | CAT | 7 | 101572 | 101592 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 126. | NW_001092341 | TCT | 9 | 101670 | 101695 | 26 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 127. | NW_001092341 | AGA | 4 | 101918 | 101931 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 128. | NW_001092341 | TCT | 4 | 102072 | 102083 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 129. | NW_001092341 | TGT | 4 | 103579 | 103590 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 130. | NW_001092341 | ACC | 4 | 104256 | 104267 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091763 |
| 131. | NW_001092341 | CGA | 4 | 104279 | 104289 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85091763 |
| 132. | NW_001092341 | CTT | 4 | 104699 | 104710 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85091763 |
| 133. | NW_001092341 | AGG | 4 | 104812 | 104823 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091763 |
| 134. | NW_001092341 | GAA | 7 | 105984 | 106004 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 135. | NW_001092341 | CAT | 4 | 107386 | 107396 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85091767 |
| 136. | NW_001092341 | ATG | 4 | 108296 | 108307 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091767 |
| 137. | NW_001092341 | TGA | 4 | 108491 | 108502 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 138. | NW_001092341 | TGT | 5 | 108500 | 108514 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 139. | NW_001092341 | TCG | 5 | 109466 | 109480 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85091769 |
| 140. | NW_001092341 | TCT | 4 | 109666 | 109676 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85091769 |
| 141. | NW_001092341 | TCC | 4 | 109849 | 109860 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091769 |
| 142. | NW_001092341 | CGC | 4 | 111628 | 111640 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85091771 |
| 143. | NW_001092341 | GAG | 4 | 112319 | 112330 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091771 |