List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092321 | GGTT | 3 | 538 | 549 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 85090873 |
| 2. | NW_001092321 | ATCA | 5 | 2208 | 2227 | 20 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 3. | NW_001092321 | TCCA | 5 | 2929 | 2948 | 20 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 4. | NW_001092321 | ATGC | 5 | 3296 | 3315 | 20 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 5. | NW_001092321 | GCTT | 9 | 3381 | 3415 | 35 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001092321 | TCCG | 3 | 3462 | 3473 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 7. | NW_001092321 | TGTC | 3 | 4609 | 4619 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 8. | NW_001092321 | TTTC | 3 | 4737 | 4747 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 9. | NW_001092321 | CTAA | 3 | 8560 | 8571 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 10. | NW_001092321 | GAGG | 3 | 9873 | 9884 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 11. | NW_001092321 | AAAT | 3 | 10464 | 10475 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 12. | NW_001092321 | AATT | 3 | 10535 | 10545 | 11 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 13. | NW_001092321 | TTAA | 3 | 11265 | 11276 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 14. | NW_001092321 | TGGA | 3 | 19362 | 19373 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 15. | NW_001092321 | CCTC | 4 | 26196 | 26211 | 16 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 16. | NW_001092321 | CCAC | 3 | 27333 | 27345 | 13 | 25.00% | 0.00% | 0.00% | 75.00% | 85090881 |
| 17. | NW_001092321 | GGAG | 3 | 29729 | 29739 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 18. | NW_001092321 | GGTA | 3 | 30053 | 30065 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 19. | NW_001092321 | ATCC | 3 | 30647 | 30658 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 20. | NW_001092321 | CCCT | 3 | 33010 | 33021 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 85090883 |
| 21. | NW_001092321 | TAGG | 5 | 35887 | 35906 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 22. | NW_001092321 | CTTC | 6 | 36117 | 36140 | 24 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 23. | NW_001092321 | GCCA | 3 | 37622 | 37633 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 24. | NW_001092321 | TTTG | 3 | 38291 | 38302 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | 85090885 |
| 25. | NW_001092321 | TCGG | 3 | 39148 | 39159 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85090885 |
| 26. | NW_001092321 | ACCA | 3 | 42382 | 42393 | 12 | 50.00% | 0.00% | 0.00% | 50.00% | 85090887 |
| 27. | NW_001092321 | TCGA | 3 | 45063 | 45073 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | 85090891 |
| 28. | NW_001092321 | GGGC | 3 | 45182 | 45193 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | 85090891 |
| 29. | NW_001092321 | CCGC | 3 | 46517 | 46528 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 30. | NW_001092321 | GACT | 3 | 46582 | 46593 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 31. | NW_001092321 | ACCA | 3 | 46877 | 46887 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 32. | NW_001092321 | TGGA | 3 | 48387 | 48397 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 33. | NW_001092321 | AATG | 3 | 49348 | 49359 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 34. | NW_001092321 | TGGC | 3 | 50890 | 50900 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85090895 |
| 35. | NW_001092321 | TCAT | 3 | 52334 | 52345 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | 85090895 |
| 36. | NW_001092321 | TTTC | 3 | 53439 | 53449 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 37. | NW_001092321 | GCAA | 3 | 53555 | 53565 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 38. | NW_001092321 | TGGC | 3 | 53584 | 53594 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 39. | NW_001092321 | TCTT | 4 | 53981 | 53996 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 40. | NW_001092321 | CCAT | 4 | 54920 | 54934 | 15 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 41. | NW_001092321 | CTTC | 3 | 56171 | 56182 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85090897 |
| 42. | NW_001092321 | TTTG | 3 | 59980 | 59991 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | 85090899 |
| 43. | NW_001092321 | GGTG | 3 | 60718 | 60730 | 13 | 0.00% | 25.00% | 75.00% | 0.00% | 85090899 |
| 44. | NW_001092321 | CAAG | 3 | 61829 | 61839 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 45. | NW_001092321 | CTCC | 4 | 62309 | 62324 | 16 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 46. | NW_001092321 | CAGA | 6 | 67858 | 67881 | 24 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 47. | NW_001092321 | GGAT | 3 | 68242 | 68253 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |