List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092319 | GGC | 5 | 1677 | 1691 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85090819 |
| 2. | NW_001092319 | CAC | 4 | 3711 | 3721 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 3. | NW_001092319 | ATC | 4 | 3791 | 3801 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 4. | NW_001092319 | CAC | 9 | 3810 | 3836 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 5. | NW_001092319 | CTT | 4 | 4101 | 4112 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 6. | NW_001092319 | CAC | 4 | 4120 | 4131 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 7. | NW_001092319 | TTG | 5 | 4420 | 4433 | 14 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 8. | NW_001092319 | GAG | 4 | 5048 | 5059 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85090821 |
| 9. | NW_001092319 | TGT | 4 | 6091 | 6102 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85090821 |
| 10. | NW_001092319 | GTG | 4 | 10564 | 10576 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 11. | NW_001092319 | GGA | 4 | 10850 | 10861 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 12. | NW_001092319 | CTC | 4 | 11867 | 11879 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85090823 |
| 13. | NW_001092319 | TCC | 4 | 11913 | 11924 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85090823 |
| 14. | NW_001092319 | TCA | 9 | 12099 | 12125 | 27 | 33.33% | 33.33% | 0.00% | 33.33% | 85090823 |
| 15. | NW_001092319 | CAT | 7 | 12541 | 12561 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | 85090823 |
| 16. | NW_001092319 | CTT | 6 | 12804 | 12821 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | 85090823 |
| 17. | NW_001092319 | GAG | 4 | 12855 | 12866 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85090823 |
| 18. | NW_001092319 | GGA | 4 | 13923 | 13934 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85090823 |
| 19. | NW_001092319 | ACC | 9 | 16658 | 16684 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 20. | NW_001092319 | GGT | 4 | 18023 | 18033 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85090825 |
| 21. | NW_001092319 | GAG | 9 | 21418 | 21444 | 27 | 33.33% | 0.00% | 66.67% | 0.00% | 85090827 |
| 22. | NW_001092319 | TCT | 5 | 22520 | 22534 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 23. | NW_001092319 | TGT | 5 | 22671 | 22684 | 14 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 24. | NW_001092319 | TCA | 4 | 22994 | 23005 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85090829 |
| 25. | NW_001092319 | TGT | 4 | 23703 | 23714 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85090829 |
| 26. | NW_001092319 | CTT | 8 | 24652 | 24676 | 25 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001092319 | GAT | 4 | 26383 | 26394 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85090831 |
| 28. | NW_001092319 | GAT | 4 | 26788 | 26799 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85090831 |
| 29. | NW_001092319 | GGT | 4 | 28449 | 28460 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 30. | NW_001092319 | TGA | 4 | 29274 | 29284 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 31. | NW_001092319 | GCG | 4 | 31069 | 31080 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85090833 |
| 32. | NW_001092319 | TCG | 5 | 31756 | 31769 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85090833 |
| 33. | NW_001092319 | CAA | 4 | 32267 | 32279 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 34. | NW_001092319 | GGA | 4 | 34436 | 34447 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85090835 |
| 35. | NW_001092319 | GAG | 4 | 34715 | 34725 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85090835 |
| 36. | NW_001092319 | TGG | 4 | 34741 | 34752 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85090835 |
| 37. | NW_001092319 | CCA | 4 | 35543 | 35554 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85090837 |
| 38. | NW_001092319 | GAG | 4 | 36138 | 36150 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85090837 |
| 39. | NW_001092319 | GAA | 4 | 36186 | 36197 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85090837 |
| 40. | NW_001092319 | TCG | 5 | 37399 | 37412 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85090837 |
| 41. | NW_001092319 | TGC | 4 | 38182 | 38193 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 42. | NW_001092319 | AGG | 4 | 38391 | 38401 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 43. | NW_001092319 | TGA | 5 | 39189 | 39203 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 44. | NW_001092319 | ATG | 4 | 39290 | 39302 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 45. | NW_001092319 | AAG | 4 | 39564 | 39575 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 46. | NW_001092319 | AAG | 4 | 39625 | 39636 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 47. | NW_001092319 | GTC | 4 | 40551 | 40562 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85090839 |
| 48. | NW_001092319 | AAC | 4 | 41414 | 41425 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85090839 |
| 49. | NW_001092319 | TTC | 4 | 41877 | 41888 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85090839 |
| 50. | NW_001092319 | GCG | 4 | 44647 | 44657 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 51. | NW_001092319 | GTC | 4 | 46564 | 46575 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 52. | NW_001092319 | GAA | 4 | 51668 | 51679 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001092319 | CCT | 4 | 53243 | 53254 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85090843 |
| 54. | NW_001092319 | TTG | 4 | 54069 | 54080 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85090843 |
| 55. | NW_001092319 | TGT | 4 | 54290 | 54301 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85090843 |
| 56. | NW_001092319 | CGC | 5 | 55086 | 55099 | 14 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 57. | NW_001092319 | CAT | 7 | 55935 | 55955 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | 85090845 |
| 58. | NW_001092319 | GCG | 5 | 56289 | 56303 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85090845 |
| 59. | NW_001092319 | CCT | 4 | 57377 | 57387 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 60. | NW_001092319 | ACC | 4 | 57489 | 57500 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 61. | NW_001092319 | CAC | 4 | 57614 | 57627 | 14 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 62. | NW_001092319 | CAG | 4 | 58655 | 58665 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85090847 |
| 63. | NW_001092319 | GTA | 4 | 58787 | 58798 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85090847 |
| 64. | NW_001092319 | GGC | 4 | 59242 | 59253 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85090847 |
| 65. | NW_001092319 | ATG | 4 | 59456 | 59467 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 66. | NW_001092319 | GAA | 4 | 59520 | 59531 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 67. | NW_001092319 | CAC | 4 | 64077 | 64087 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 68. | NW_001092319 | AGA | 4 | 64165 | 64175 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 69. | NW_001092319 | GAA | 4 | 64336 | 64347 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 70. | NW_001092319 | CGA | 4 | 64774 | 64784 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 71. | NW_001092319 | GGC | 4 | 64791 | 64802 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 72. | NW_001092319 | AGC | 5 | 64803 | 64817 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 73. | NW_001092319 | ACA | 4 | 64836 | 64847 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 74. | NW_001092319 | GCA | 4 | 64961 | 64972 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 75. | NW_001092319 | CCG | 4 | 64974 | 64985 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 76. | NW_001092319 | GTG | 8 | 65331 | 65353 | 23 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 77. | NW_001092319 | ACA | 4 | 66429 | 66440 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 78. | NW_001092319 | TCG | 5 | 66454 | 66468 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 79. | NW_001092319 | CCA | 4 | 66604 | 66615 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 80. | NW_001092319 | CAA | 4 | 66646 | 66657 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 81. | NW_001092319 | CTC | 4 | 66666 | 66677 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 82. | NW_001092319 | CAA | 7 | 66694 | 66714 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 83. | NW_001092319 | GAA | 4 | 66733 | 66744 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |