List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092004 | GAC | 4 | 2250 | 2261 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079369 |
| 2. | NW_001092004 | ACC | 7 | 2275 | 2295 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85079369 |
| 3. | NW_001092004 | AGC | 4 | 2343 | 2354 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079369 |
| 4. | NW_001092004 | AAG | 4 | 3589 | 3600 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85079369 |
| 5. | NW_001092004 | CAT | 4 | 4202 | 4213 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85079369 |
| 6. | NW_001092004 | CAA | 7 | 6691 | 6710 | 20 | 66.67% | 0.00% | 0.00% | 33.33% | 85079369 |
| 7. | NW_001092004 | GAC | 4 | 6891 | 6902 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079369 |
| 8. | NW_001092004 | TGG | 4 | 7166 | 7178 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 9. | NW_001092004 | GAA | 4 | 7478 | 7488 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 10. | NW_001092004 | CTT | 4 | 7752 | 7763 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85079374 |
| 11. | NW_001092004 | TAG | 4 | 8808 | 8818 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85079374 |
| 12. | NW_001092004 | GTC | 9 | 8819 | 8844 | 26 | 0.00% | 33.33% | 33.33% | 33.33% | 85079374 |
| 13. | NW_001092004 | GCC | 5 | 9202 | 9216 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 14. | NW_001092004 | CGC | 4 | 11733 | 11744 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85079378 |
| 15. | NW_001092004 | ACC | 4 | 12281 | 12292 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85079378 |
| 16. | NW_001092004 | AGC | 4 | 12302 | 12313 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079378 |
| 17. | NW_001092004 | GAC | 4 | 12778 | 12789 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079378 |
| 18. | NW_001092004 | AAG | 4 | 12818 | 12829 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85079378 |
| 19. | NW_001092004 | GAG | 4 | 12831 | 12842 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85079378 |
| 20. | NW_001092004 | AGA | 5 | 13334 | 13347 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 21. | NW_001092004 | GTT | 4 | 14393 | 14404 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 22. | NW_001092004 | CCT | 7 | 14500 | 14520 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 23. | NW_001092004 | CAC | 4 | 14627 | 14638 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 24. | NW_001092004 | CCG | 4 | 14758 | 14769 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85079381 |
| 25. | NW_001092004 | AGA | 4 | 16605 | 16616 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85079381 |
| 26. | NW_001092004 | GGA | 4 | 16774 | 16785 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85079381 |
| 27. | NW_001092004 | AGG | 4 | 16806 | 16817 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85079381 |
| 28. | NW_001092004 | GCG | 4 | 19165 | 19175 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 29. | NW_001092004 | GTA | 4 | 21652 | 21663 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85079387 |
| 30. | NW_001092004 | CTC | 4 | 22912 | 22922 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 31. | NW_001092004 | GAA | 4 | 24632 | 24643 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 32. | NW_001092004 | GTG | 9 | 24747 | 24773 | 27 | 0.00% | 33.33% | 66.67% | 0.00% | 85079390 |
| 33. | NW_001092004 | GTG | 4 | 24822 | 24833 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85079390 |
| 34. | NW_001092004 | TGG | 4 | 25040 | 25051 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85079390 |
| 35. | NW_001092004 | TGG | 5 | 25168 | 25182 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 36. | NW_001092004 | GGA | 4 | 25492 | 25502 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 37. | NW_001092004 | ACT | 4 | 31282 | 31292 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85079397 |
| 38. | NW_001092004 | CCG | 4 | 31554 | 31564 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85079397 |
| 39. | NW_001092004 | GAA | 4 | 32450 | 32460 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 40. | NW_001092004 | CTC | 5 | 35796 | 35811 | 16 | 0.00% | 33.33% | 0.00% | 66.67% | 85079405 |
| 41. | NW_001092004 | TCC | 4 | 35911 | 35922 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85079405 |
| 42. | NW_001092004 | GAA | 4 | 37386 | 37397 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 43. | NW_001092004 | TCC | 5 | 38649 | 38662 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | 85079410 |
| 44. | NW_001092004 | GCA | 5 | 39940 | 39955 | 16 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 45. | NW_001092004 | CAA | 4 | 41257 | 41268 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85079414 |
| 46. | NW_001092004 | ACG | 4 | 43227 | 43238 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079418 |
| 47. | NW_001092004 | CGG | 4 | 44341 | 44352 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85079418 |
| 48. | NW_001092004 | CGT | 4 | 44554 | 44566 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85079418 |
| 49. | NW_001092004 | TGA | 4 | 44706 | 44717 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85079418 |
| 50. | NW_001092004 | CAA | 9 | 45878 | 45904 | 27 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 51. | NW_001092004 | CAA | 19 | 45933 | 45990 | 58 | 66.67% | 0.00% | 0.00% | 33.33% | 85079423 |
| 52. | NW_001092004 | AGA | 8 | 46347 | 46369 | 23 | 66.67% | 0.00% | 33.33% | 0.00% | 85079423 |
| 53. | NW_001092004 | TGA | 5 | 47307 | 47321 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 54. | NW_001092004 | GTG | 4 | 48051 | 48062 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 55. | NW_001092004 | ACA | 4 | 48297 | 48308 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 56. | NW_001092004 | CTG | 4 | 50918 | 50930 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 57. | NW_001092004 | CTT | 5 | 51482 | 51496 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092004 | CCT | 11 | 51488 | 51521 | 34 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 59. | NW_001092004 | CTC | 4 | 51526 | 51536 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 60. | NW_001092004 | CAG | 8 | 51785 | 51808 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85079428 |
| 61. | NW_001092004 | TGG | 4 | 54884 | 54895 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85079428 |
| 62. | NW_001092004 | TGG | 4 | 54899 | 54910 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85079428 |
| 63. | NW_001092004 | CAT | 4 | 56105 | 56115 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85079432 |
| 64. | NW_001092004 | GTA | 4 | 57251 | 57262 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85079432 |
| 65. | NW_001092004 | CTT | 4 | 60267 | 60278 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85079435 |
| 66. | NW_001092004 | ACG | 4 | 60762 | 60773 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079435 |
| 67. | NW_001092004 | GTA | 4 | 60975 | 60986 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85079435 |
| 68. | NW_001092004 | AGG | 4 | 62102 | 62113 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85079435 |
| 69. | NW_001092004 | TCG | 4 | 63165 | 63177 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 70. | NW_001092004 | CGT | 4 | 63311 | 63322 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85079439 |
| 71. | NW_001092004 | CAC | 4 | 65034 | 65045 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85079439 |
| 72. | NW_001092004 | CTC | 4 | 65127 | 65138 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85079439 |
| 73. | NW_001092004 | CGC | 4 | 66079 | 66090 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85079442 |
| 74. | NW_001092004 | GTT | 6 | 67256 | 67273 | 18 | 0.00% | 66.67% | 33.33% | 0.00% | 85079442 |
| 75. | NW_001092004 | GTC | 4 | 67304 | 67315 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85079442 |
| 76. | NW_001092004 | TGG | 4 | 69206 | 69217 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 77. | NW_001092004 | ACT | 14 | 69538 | 69578 | 41 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 78. | NW_001092004 | TCC | 6 | 69637 | 69657 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 79. | NW_001092004 | CAC | 13 | 69983 | 70021 | 39 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 80. | NW_001092004 | TCA | 7 | 70030 | 70050 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 81. | NW_001092004 | TCC | 5 | 70326 | 70340 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85079446 |
| 82. | NW_001092004 | CTC | 4 | 70355 | 70365 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85079446 |
| 83. | NW_001092004 | CAC | 4 | 72474 | 72485 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85079446 |
| 84. | NW_001092004 | GGA | 4 | 72855 | 72866 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85079446 |
| 85. | NW_001092004 | CGA | 4 | 73237 | 73248 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85079446 |
| 86. | NW_001092004 | AGA | 6 | 73374 | 73391 | 18 | 66.67% | 0.00% | 33.33% | 0.00% | 85079446 |
| 87. | NW_001092004 | GCG | 4 | 74109 | 74119 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |