List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001091999 | ACC | 12 | 378 | 414 | 37 | 33.33% | 0.00% | 0.00% | 66.67% | 85078861 |
| 2. | NW_001091999 | TCA | 4 | 1969 | 1980 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078861 |
| 3. | NW_001091999 | TGG | 5 | 3711 | 3725 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85078861 |
| 4. | NW_001091999 | AGG | 8 | 3723 | 3746 | 24 | 33.33% | 0.00% | 66.67% | 0.00% | 85078861 |
| 5. | NW_001091999 | GCT | 4 | 5254 | 5264 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 6. | NW_001091999 | CTC | 4 | 5605 | 5616 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078865 |
| 7. | NW_001091999 | TCC | 4 | 7877 | 7888 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078865 |
| 8. | NW_001091999 | CAT | 4 | 8127 | 8138 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078865 |
| 9. | NW_001091999 | GAG | 5 | 8749 | 8763 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 10. | NW_001091999 | TCT | 4 | 8925 | 8935 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 11. | NW_001091999 | CTC | 4 | 9281 | 9292 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078869 |
| 12. | NW_001091999 | TCC | 4 | 9354 | 9366 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85078869 |
| 13. | NW_001091999 | TGA | 5 | 9464 | 9478 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85078869 |
| 14. | NW_001091999 | CAA | 5 | 10181 | 10195 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 15. | NW_001091999 | CTT | 5 | 10484 | 10498 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 16. | NW_001091999 | GAG | 5 | 11125 | 11139 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85078873 |
| 17. | NW_001091999 | CAG | 6 | 11592 | 11612 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85078873 |
| 18. | NW_001091999 | CAA | 8 | 11616 | 11639 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85078873 |
| 19. | NW_001091999 | AGA | 4 | 12466 | 12477 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85078873 |
| 20. | NW_001091999 | ATC | 4 | 12772 | 12782 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85078873 |
| 21. | NW_001091999 | GCG | 4 | 13447 | 13458 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85078873 |
| 22. | NW_001091999 | GGC | 4 | 13734 | 13745 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85078873 |
| 23. | NW_001091999 | CTC | 4 | 13928 | 13939 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078873 |
| 24. | NW_001091999 | TGC | 4 | 14249 | 14260 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078873 |
| 25. | NW_001091999 | TGG | 15 | 14255 | 14299 | 45 | 0.00% | 33.33% | 66.67% | 0.00% | 85078873 |
| 26. | NW_001091999 | CGT | 4 | 14527 | 14541 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85078873 |
| 27. | NW_001091999 | GGT | 18 | 14562 | 14616 | 55 | 0.00% | 33.33% | 66.67% | 0.00% | 85078873 |
| 28. | NW_001091999 | GAG | 4 | 14767 | 14778 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078873 |
| 29. | NW_001091999 | GAT | 4 | 14852 | 14863 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85078873 |
| 30. | NW_001091999 | GCT | 4 | 14931 | 14942 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078873 |
| 31. | NW_001091999 | CTG | 5 | 14956 | 14970 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85078873 |
| 32. | NW_001091999 | CAA | 4 | 15953 | 15963 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 33. | NW_001091999 | AGC | 6 | 18412 | 18428 | 17 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 34. | NW_001091999 | CCG | 4 | 19016 | 19027 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 35. | NW_001091999 | GTC | 4 | 19189 | 19199 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 36. | NW_001091999 | GCA | 5 | 19923 | 19937 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85078878 |
| 37. | NW_001091999 | GCA | 7 | 20239 | 20259 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85078878 |
| 38. | NW_001091999 | CAA | 5 | 20270 | 20284 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85078878 |
| 39. | NW_001091999 | CAG | 7 | 20279 | 20299 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85078878 |
| 40. | NW_001091999 | CAG | 5 | 20303 | 20317 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85078878 |
| 41. | NW_001091999 | TGA | 4 | 22707 | 22717 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 42. | NW_001091999 | TAG | 4 | 27922 | 27932 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 43. | NW_001091999 | CAA | 4 | 28076 | 28087 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 44. | NW_001091999 | CAC | 4 | 28292 | 28304 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 45. | NW_001091999 | GCT | 4 | 28503 | 28514 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078890 |
| 46. | NW_001091999 | GGC | 4 | 28827 | 28838 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85078890 |
| 47. | NW_001091999 | ATG | 4 | 29648 | 29659 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85078890 |
| 48. | NW_001091999 | GAA | 7 | 29739 | 29759 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | 85078890 |
| 49. | NW_001091999 | ACC | 4 | 29920 | 29931 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85078890 |
| 50. | NW_001091999 | AGA | 8 | 30431 | 30455 | 25 | 66.67% | 0.00% | 33.33% | 0.00% | 85078890 |
| 51. | NW_001091999 | TGA | 8 | 30447 | 30470 | 24 | 33.33% | 33.33% | 33.33% | 0.00% | 85078890 |
| 52. | NW_001091999 | AGA | 5 | 30704 | 30718 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85078890 |
| 53. | NW_001091999 | AGG | 14 | 30713 | 30753 | 41 | 33.33% | 0.00% | 66.67% | 0.00% | 85078890 |
| 54. | NW_001091999 | GAC | 4 | 30817 | 30828 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078890 |
| 55. | NW_001091999 | ACG | 14 | 30836 | 30877 | 42 | 33.33% | 0.00% | 33.33% | 33.33% | 85078890 |
| 56. | NW_001091999 | CCG | 4 | 30892 | 30903 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85078890 |
| 57. | NW_001091999 | ACC | 4 | 30947 | 30958 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85078890 |
| 58. | NW_001091999 | GGA | 4 | 30969 | 30980 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078890 |
| 59. | NW_001091999 | GGC | 4 | 31159 | 31170 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85078890 |
| 60. | NW_001091999 | TCT | 4 | 31839 | 31849 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85078895 |
| 61. | NW_001091999 | CTT | 4 | 31945 | 31956 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85078895 |
| 62. | NW_001091999 | CTG | 4 | 31972 | 31984 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | 85078895 |
| 63. | NW_001091999 | CGT | 11 | 33086 | 33118 | 33 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 64. | NW_001091999 | TGT | 4 | 38694 | 38704 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85078904 |
| 65. | NW_001091999 | CGC | 5 | 39089 | 39103 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85078904 |
| 66. | NW_001091999 | TCA | 5 | 39340 | 39354 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85078904 |
| 67. | NW_001091999 | GCA | 4 | 40470 | 40481 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078908 |
| 68. | NW_001091999 | AGA | 12 | 41604 | 41638 | 35 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 69. | NW_001091999 | CAA | 4 | 42467 | 42478 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85078912 |
| 70. | NW_001091999 | ACC | 4 | 45811 | 45822 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85078920 |
| 71. | NW_001091999 | TGG | 4 | 46768 | 46778 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85078920 |
| 72. | NW_001091999 | GTG | 4 | 46896 | 46906 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85078920 |
| 73. | NW_001091999 | CCA | 6 | 47931 | 47948 | 18 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 74. | NW_001091999 | GCA | 4 | 50982 | 50993 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078924 |
| 75. | NW_001091999 | ATG | 4 | 51349 | 51360 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85078924 |
| 76. | NW_001091999 | GCC | 4 | 51987 | 51997 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85078924 |
| 77. | NW_001091999 | GAG | 4 | 52306 | 52317 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078924 |
| 78. | NW_001091999 | TGT | 4 | 53424 | 53435 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85078929 |
| 79. | NW_001091999 | TGT | 4 | 53664 | 53676 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 80. | NW_001091999 | GCC | 4 | 56451 | 56462 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 81. | NW_001091999 | TGT | 4 | 56860 | 56871 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85078933 |
| 82. | NW_001091999 | TGC | 5 | 56881 | 56895 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85078933 |
| 83. | NW_001091999 | TGT | 5 | 57877 | 57891 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 84. | NW_001091999 | CGC | 4 | 58286 | 58297 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 85. | NW_001091999 | TGA | 5 | 61009 | 61023 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85078941 |
| 86. | NW_001091999 | GAT | 4 | 64329 | 64339 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85078944 |
| 87. | NW_001091999 | GCA | 4 | 64686 | 64697 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078944 |
| 88. | NW_001091999 | CGT | 4 | 64779 | 64790 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |