List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001091998 | CGA | 5 | 1005 | 1018 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 2. | NW_001091998 | CAA | 6 | 1148 | 1164 | 17 | 66.67% | 0.00% | 0.00% | 33.33% | 85078763 |
| 3. | NW_001091998 | GCA | 4 | 1651 | 1662 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078763 |
| 4. | NW_001091998 | ACA | 4 | 2427 | 2438 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85078763 |
| 5. | NW_001091998 | ATG | 4 | 2655 | 2666 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85078763 |
| 6. | NW_001091998 | CTG | 4 | 2877 | 2887 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85078763 |
| 7. | NW_001091998 | CAG | 5 | 3342 | 3356 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85078763 |
| 8. | NW_001091998 | TGT | 68 | 5184 | 5388 | 205 | 0.00% | 66.67% | 33.33% | 0.00% | 85078767 |
| 9. | NW_001091998 | GAT | 4 | 6988 | 6999 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 10. | NW_001091998 | CAC | 14 | 11757 | 11798 | 42 | 33.33% | 0.00% | 0.00% | 66.67% | 85078775 |
| 11. | NW_001091998 | CAT | 5 | 11818 | 11832 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85078775 |
| 12. | NW_001091998 | ACC | 4 | 11848 | 11859 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85078775 |
| 13. | NW_001091998 | TAC | 4 | 12040 | 12051 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078775 |
| 14. | NW_001091998 | TGA | 4 | 15352 | 15363 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001091998 | CAT | 4 | 16154 | 16165 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078779 |
| 16. | NW_001091998 | TGT | 4 | 17337 | 17347 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 17. | NW_001091998 | GTG | 4 | 18041 | 18052 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 18. | NW_001091998 | GGT | 4 | 19102 | 19113 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 19. | NW_001091998 | CTC | 4 | 19216 | 19227 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 20. | NW_001091998 | CAC | 7 | 19663 | 19683 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85078782 |
| 21. | NW_001091998 | CTC | 4 | 21699 | 21709 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85078786 |
| 22. | NW_001091998 | CGC | 5 | 21725 | 21739 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85078786 |
| 23. | NW_001091998 | GAA | 4 | 23389 | 23401 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 24. | NW_001091998 | GAT | 5 | 24082 | 24096 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 25. | NW_001091998 | GTG | 4 | 24205 | 24216 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 26. | NW_001091998 | TGT | 4 | 24924 | 24935 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85078791 |
| 27. | NW_001091998 | CGT | 4 | 24933 | 24944 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078791 |
| 28. | NW_001091998 | CTC | 11 | 26585 | 26620 | 36 | 0.00% | 33.33% | 0.00% | 66.67% | 85078795 |
| 29. | NW_001091998 | GTG | 4 | 27712 | 27723 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85078795 |
| 30. | NW_001091998 | GAA | 5 | 27850 | 27864 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85078795 |
| 31. | NW_001091998 | TCC | 6 | 28023 | 28043 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | 85078795 |
| 32. | NW_001091998 | AGG | 8 | 28363 | 28387 | 25 | 33.33% | 0.00% | 66.67% | 0.00% | 85078795 |
| 33. | NW_001091998 | TGG | 4 | 28655 | 28666 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85078795 |
| 34. | NW_001091998 | AGA | 9 | 29720 | 29745 | 26 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001091998 | CCG | 4 | 29965 | 29976 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85078799 |
| 36. | NW_001091998 | TGC | 4 | 30002 | 30013 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078799 |
| 37. | NW_001091998 | TCT | 11 | 30006 | 30038 | 33 | 0.00% | 66.67% | 0.00% | 33.33% | 85078799 |
| 38. | NW_001091998 | GCG | 4 | 31261 | 31271 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85078799 |
| 39. | NW_001091998 | TCA | 4 | 32898 | 32909 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078803 |
| 40. | NW_001091998 | TTG | 4 | 33854 | 33864 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 41. | NW_001091998 | AGA | 4 | 36213 | 36224 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85078806 |
| 42. | NW_001091998 | TGA | 4 | 37285 | 37296 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85078806 |
| 43. | NW_001091998 | GGA | 4 | 37358 | 37368 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85078806 |
| 44. | NW_001091998 | GGT | 4 | 38716 | 38727 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85078809 |
| 45. | NW_001091998 | CTC | 4 | 39611 | 39622 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078809 |
| 46. | NW_001091998 | AGG | 5 | 40724 | 40738 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 47. | NW_001091998 | GGA | 4 | 44724 | 44735 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078813 |
| 48. | NW_001091998 | TGT | 8 | 46937 | 46960 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85078817 |
| 49. | NW_001091998 | TGC | 8 | 46972 | 46995 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | 85078817 |
| 50. | NW_001091998 | CGC | 4 | 46990 | 47001 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85078817 |
| 51. | NW_001091998 | CTC | 9 | 47164 | 47189 | 26 | 0.00% | 33.33% | 0.00% | 66.67% | 85078817 |
| 52. | NW_001091998 | AAG | 4 | 47247 | 47258 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85078817 |
| 53. | NW_001091998 | TGG | 9 | 47961 | 47987 | 27 | 0.00% | 33.33% | 66.67% | 0.00% | 85078817 |
| 54. | NW_001091998 | TGC | 4 | 47985 | 47996 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078817 |
| 55. | NW_001091998 | GTT | 5 | 48091 | 48105 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85078817 |
| 56. | NW_001091998 | GTT | 4 | 48157 | 48169 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 57. | NW_001091998 | GCG | 4 | 49338 | 49350 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 58. | NW_001091998 | TCG | 4 | 49858 | 49869 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 59. | NW_001091998 | TCC | 4 | 50107 | 50117 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 60. | NW_001091998 | GAC | 6 | 52217 | 52234 | 18 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 61. | NW_001091998 | TGC | 4 | 52240 | 52251 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 62. | NW_001091998 | GCT | 4 | 52317 | 52328 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 63. | NW_001091998 | ACA | 4 | 53214 | 53225 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85078825 |
| 64. | NW_001091998 | CTT | 4 | 54661 | 54672 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001091998 | CGT | 4 | 55740 | 55750 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 66. | NW_001091998 | CTA | 4 | 57597 | 57609 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 67. | NW_001091998 | TCT | 4 | 58240 | 58250 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 68. | NW_001091998 | GTC | 4 | 61417 | 61428 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078833 |
| 69. | NW_001091998 | TAC | 4 | 64665 | 64676 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001091998 | ATT | 5 | 65390 | 65403 | 14 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 71. | NW_001091998 | TAC | 4 | 65867 | 65878 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 72. | NW_001091998 | ATA | 4 | 65924 | 65935 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 73. | NW_001091998 | ATA | 4 | 65962 | 65973 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |