List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001091992 | AGA | 5 | 994 | 1008 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 2. | NW_001091992 | TCC | 4 | 2803 | 2814 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 3. | NW_001091992 | CTC | 5 | 4106 | 4120 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85078149 |
| 4. | NW_001091992 | CGT | 4 | 4447 | 4457 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85078149 |
| 5. | NW_001091992 | TTC | 4 | 4463 | 4474 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85078149 |
| 6. | NW_001091992 | GAG | 4 | 5957 | 5969 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85078149 |
| 7. | NW_001091992 | CTC | 4 | 6792 | 6804 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85078153 |
| 8. | NW_001091992 | CTT | 6 | 6818 | 6836 | 19 | 0.00% | 66.67% | 0.00% | 33.33% | 85078153 |
| 9. | NW_001091992 | CAC | 5 | 6887 | 6901 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85078153 |
| 10. | NW_001091992 | AGC | 8 | 6948 | 6971 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85078153 |
| 11. | NW_001091992 | AGA | 5 | 6966 | 6980 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85078153 |
| 12. | NW_001091992 | CTT | 4 | 6990 | 7001 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85078153 |
| 13. | NW_001091992 | GAT | 6 | 7621 | 7641 | 21 | 33.33% | 33.33% | 33.33% | 0.00% | 85078153 |
| 14. | NW_001091992 | AGG | 4 | 7741 | 7751 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85078153 |
| 15. | NW_001091992 | ACA | 11 | 11259 | 11292 | 34 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 16. | NW_001091992 | ATC | 4 | 11295 | 11309 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 17. | NW_001091992 | CTA | 4 | 11675 | 11686 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078158 |
| 18. | NW_001091992 | GCC | 4 | 11715 | 11726 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85078158 |
| 19. | NW_001091992 | GAC | 4 | 12628 | 12639 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078158 |
| 20. | NW_001091992 | AAC | 23 | 12696 | 12763 | 68 | 66.67% | 0.00% | 0.00% | 33.33% | 85078158 |
| 21. | NW_001091992 | CTG | 7 | 13521 | 13541 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85078162 |
| 22. | NW_001091992 | TCT | 8 | 13712 | 13735 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85078162 |
| 23. | NW_001091992 | TCT | 4 | 13748 | 13759 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85078162 |
| 24. | NW_001091992 | CTT | 4 | 13797 | 13808 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85078162 |
| 25. | NW_001091992 | GAG | 4 | 14168 | 14179 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078162 |
| 26. | NW_001091992 | GGA | 4 | 14284 | 14295 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078162 |
| 27. | NW_001091992 | AGA | 6 | 14320 | 14337 | 18 | 66.67% | 0.00% | 33.33% | 0.00% | 85078162 |
| 28. | NW_001091992 | CAT | 4 | 16034 | 16045 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078162 |
| 29. | NW_001091992 | GTG | 4 | 16234 | 16245 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 30. | NW_001091992 | GTG | 5 | 16308 | 16322 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 31. | NW_001091992 | CGG | 5 | 17261 | 17275 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85078165 |
| 32. | NW_001091992 | TCT | 4 | 17450 | 17460 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85078165 |
| 33. | NW_001091992 | TCC | 4 | 18182 | 18194 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85078165 |
| 34. | NW_001091992 | CGC | 6 | 18705 | 18723 | 19 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 35. | NW_001091992 | CAA | 4 | 20336 | 20347 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85078169 |
| 36. | NW_001091992 | CGA | 4 | 20734 | 20745 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078169 |
| 37. | NW_001091992 | AGC | 6 | 20825 | 20842 | 18 | 33.33% | 0.00% | 33.33% | 33.33% | 85078169 |
| 38. | NW_001091992 | ACG | 4 | 21327 | 21338 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 39. | NW_001091992 | GCC | 4 | 21809 | 21820 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 40. | NW_001091992 | CAC | 4 | 22361 | 22372 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85078174 |
| 41. | NW_001091992 | AAC | 4 | 22522 | 22532 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85078174 |
| 42. | NW_001091992 | GCC | 4 | 23249 | 23260 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85078174 |
| 43. | NW_001091992 | CGA | 4 | 23565 | 23576 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078174 |
| 44. | NW_001091992 | ACA | 4 | 24327 | 24338 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 45. | NW_001091992 | CAT | 4 | 24862 | 24873 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 46. | NW_001091992 | GCA | 4 | 27373 | 27385 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 47. | NW_001091992 | GCA | 4 | 27446 | 27456 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 48. | NW_001091992 | GTC | 4 | 29583 | 29594 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078183 |
| 49. | NW_001091992 | GCA | 4 | 30391 | 30402 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078183 |
| 50. | NW_001091992 | TCG | 4 | 32044 | 32055 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078183 |
| 51. | NW_001091992 | AGA | 4 | 32150 | 32161 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85078183 |
| 52. | NW_001091992 | TGT | 12 | 32723 | 32758 | 36 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001091992 | AGA | 7 | 33180 | 33200 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 54. | NW_001091992 | TGT | 9 | 33444 | 33470 | 27 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 55. | NW_001091992 | TCC | 4 | 35449 | 35460 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078187 |
| 56. | NW_001091992 | CAG | 4 | 35472 | 35483 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078187 |
| 57. | NW_001091992 | TGT | 7 | 35514 | 35534 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85078187 |
| 58. | NW_001091992 | CTG | 5 | 35537 | 35551 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85078187 |
| 59. | NW_001091992 | TCG | 4 | 35801 | 35812 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078187 |
| 60. | NW_001091992 | GTG | 5 | 35978 | 35992 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85078187 |
| 61. | NW_001091992 | ATC | 4 | 37117 | 37128 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 62. | NW_001091992 | TGG | 4 | 38329 | 38340 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85078191 |
| 63. | NW_001091992 | ACA | 4 | 39513 | 39524 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85078191 |
| 64. | NW_001091992 | CTA | 4 | 39958 | 39969 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078191 |
| 65. | NW_001091992 | ACC | 4 | 40130 | 40140 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85078191 |
| 66. | NW_001091992 | GAA | 4 | 40368 | 40379 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85078191 |
| 67. | NW_001091992 | TCA | 4 | 40476 | 40487 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85078191 |
| 68. | NW_001091992 | GCA | 4 | 40801 | 40812 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85078191 |
| 69. | NW_001091992 | TCG | 4 | 40952 | 40962 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 70. | NW_001091992 | GGA | 4 | 43630 | 43641 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078199 |
| 71. | NW_001091992 | GTG | 4 | 43750 | 43760 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 72. | NW_001091992 | ACA | 4 | 44246 | 44257 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 73. | NW_001091992 | CTG | 4 | 45137 | 45147 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85078203 |
| 74. | NW_001091992 | GGA | 4 | 45312 | 45323 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85078203 |
| 75. | NW_001091992 | TGG | 4 | 46104 | 46115 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85078203 |
| 76. | NW_001091992 | CTC | 5 | 46322 | 46336 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85078203 |
| 77. | NW_001091992 | CCT | 4 | 46339 | 46350 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85078203 |
| 78. | NW_001091992 | GTT | 4 | 46599 | 46610 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85078203 |
| 79. | NW_001091992 | CGC | 4 | 46748 | 46758 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85078203 |
| 80. | NW_001091992 | TGC | 7 | 47331 | 47351 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 81. | NW_001091992 | TCG | 13 | 47630 | 47667 | 38 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 82. | NW_001091992 | GGT | 5 | 48373 | 48386 | 14 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 83. | NW_001091992 | CTG | 5 | 48437 | 48450 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85078208 |
| 84. | NW_001091992 | GTC | 5 | 48559 | 48573 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85078208 |
| 85. | NW_001091992 | GGA | 6 | 52472 | 52490 | 19 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 86. | NW_001091992 | TGG | 4 | 52532 | 52543 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 87. | NW_001091992 | GTG | 4 | 52879 | 52890 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 88. | NW_001091992 | GTC | 4 | 55191 | 55202 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85078215 |