List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001091992 | GTAT | 3 | 1186 | 1197 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 2. | NW_001091992 | GTAG | 4 | 1250 | 1265 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 3. | NW_001091992 | AGGT | 3 | 1321 | 1336 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 4. | NW_001091992 | GAAG | 11 | 1991 | 2033 | 43 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 5. | NW_001091992 | GTAC | 3 | 2097 | 2108 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 6. | NW_001091992 | GACA | 3 | 2149 | 2160 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 7. | NW_001091992 | CACT | 4 | 2191 | 2206 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 8. | NW_001091992 | TGGA | 3 | 2257 | 2268 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 9. | NW_001091992 | TAGG | 3 | 2553 | 2564 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 10. | NW_001091992 | TGGA | 3 | 2630 | 2641 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 11. | NW_001091992 | CCAT | 6 | 2927 | 2950 | 24 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 12. | NW_001091992 | AGGT | 3 | 3010 | 3021 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 13. | NW_001091992 | TACC | 3 | 3218 | 3230 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 14. | NW_001091992 | TGGA | 3 | 3422 | 3433 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 15. | NW_001091992 | TAGG | 12 | 3620 | 3667 | 48 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 16. | NW_001091992 | AGAA | 3 | 6165 | 6175 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 17. | NW_001091992 | AAGC | 3 | 6247 | 6257 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 18. | NW_001091992 | GGAG | 3 | 7596 | 7607 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85078153 |
| 19. | NW_001091992 | GCTT | 3 | 9437 | 9447 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 20. | NW_001091992 | ATCC | 3 | 11456 | 11467 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85078158 |
| 21. | NW_001091992 | AGGG | 3 | 12252 | 12262 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85078158 |
| 22. | NW_001091992 | CTGC | 3 | 15637 | 15647 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85078162 |
| 23. | NW_001091992 | TTTG | 3 | 16498 | 16509 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 24. | NW_001091992 | GTGG | 5 | 18377 | 18397 | 21 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 25. | NW_001091992 | GCGG | 3 | 20868 | 20879 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | 85078169 |
| 26. | NW_001091992 | TCCT | 3 | 22243 | 22254 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 85078174 |
| 27. | NW_001091992 | CGCA | 3 | 25188 | 25199 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 28. | NW_001091992 | GAAG | 3 | 25595 | 25606 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 85078179 |
| 29. | NW_001091992 | TCAC | 4 | 27413 | 27428 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 30. | NW_001091992 | ATTT | 3 | 27646 | 27657 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 31. | NW_001091992 | CCTA | 4 | 27719 | 27734 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 32. | NW_001091992 | TACT | 3 | 27762 | 27772 | 11 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 33. | NW_001091992 | TCCC | 4 | 27805 | 27820 | 16 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 34. | NW_001091992 | CATA | 3 | 29026 | 29036 | 11 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 35. | NW_001091992 | GTTT | 3 | 33047 | 33057 | 11 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 36. | NW_001091992 | AGAA | 3 | 33581 | 33591 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 37. | NW_001091992 | AGGT | 3 | 34977 | 34988 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 38. | NW_001091992 | CTGC | 3 | 35267 | 35277 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85078187 |
| 39. | NW_001091992 | GCTC | 3 | 36964 | 36975 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85078187 |
| 40. | NW_001091992 | TTGA | 3 | 43943 | 43953 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 41. | NW_001091992 | TTCG | 3 | 44721 | 44732 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 42. | NW_001091992 | GGGT | 3 | 45806 | 45817 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 85078203 |
| 43. | NW_001091992 | CGCC | 3 | 46665 | 46676 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | 85078203 |
| 44. | NW_001091992 | TCTT | 3 | 47113 | 47124 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 45. | NW_001091992 | GATG | 3 | 47245 | 47256 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 46. | NW_001091992 | GTCT | 4 | 49972 | 49987 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 47. | NW_001091992 | CTTG | 4 | 50775 | 50790 | 16 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 48. | NW_001091992 | TGGC | 3 | 51844 | 51854 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | 85078212 |
| 49. | NW_001091992 | CGTA | 3 | 53171 | 53182 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 50. | NW_001091992 | AACG | 3 | 54330 | 54342 | 13 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 51. | NW_001091992 | CTGT | 6 | 54363 | 54390 | 28 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 52. | NW_001091992 | GTAG | 6 | 57817 | 57839 | 23 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 53. | NW_001091992 | TAGG | 5 | 58449 | 58468 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |