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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Mitochondria Genomes
Click on the motif to get repeats
A
C
G
T
TC
AT
CA
CG
GC
TA
TG
AC
GT
AG
CT
GAA
ATA
TCC
AGT
GCA
GGC
AAT
CTC
AGC
CTA
ATG
TCA
CAT
GTG
TTC
TCT
CAA
TGG
GCT
GGA
GCG
TGC
CTT
TGT
TAG
AAG
GAT
CTG
ATT
CAC
CCT
CAG
TAC
AGA
GCC
ACC
AGG
GTT
GAC
TCG
GTA
GGT
ACT
CCA
TAT
TTG
CCG
TTA
CGC
ACA
TGA
CGG
AAC
CGT
TAA
GATT
CCCT
GGAA
TCCT
AGCC
CCAT
AAAC
CCTC
GACT
TTCC
GGTC
AGCT
CCAA
ACTC
AGTA
CTAC
ACCC
ATGG
AGAC
CACC
ACGT
GACC
TCAA
GAGC
GGGT
GCAC
GGAG
TATT
TGAG
GTTT
CTCC
ACTG
CCTT
CAGA
CTAG
GATC
AGCG
CAAC
TACA
TACG
TTAC
ACGA
CCCA
GAAC
CGAT
ACAG
GTAT
ATAC
AGTT
GCAA
AACC
TTTC
CAAT
GTTG
TCCC
CCGG
CGAG
CGCA
AATA
CTTG
CTCA
CCTA
TGTC
GCAG
TAAT
CATA
CTGC
TCTA
GAAT
GGCG
TGCA
CCCG
AAAG
TTGG
TGGG
GGAT
CACG
ATCC
ATCT
ACTT
TGTA
CGCC
TTTG
GGGC
CAGG
CGTC
ATCG
ATAG
GAAG
GGCC
GCAT
CGTT
TCTG
TGAT
TAGA
ACCG
GGAC
CGGT
TCGT
TAGT
GCCT
GACG
ACTA
TTAT
CGGC
AAGT
ACCT
CTCG
ATTG
AGAT
TCGC
AGGG
GTGA
CCAC
TGGA
TCCA
AGTG
ATTT
TCGG
CCGT
GCTC
ACCA
TACC
GATG
CCTG
GTAC
TCAT
TTGC
CTAT
TGGC
GTGG
GAGT
ACGC
CGGG
GTAG
AGCA
GTCA
CGGA
AACA
CATT
AACT
GGTG
ATCA
CAGC
CGTA
GTGC
ATAA
CTTC
CTTA
CCAG
GGCA
AATT
CAAG
TTGA
CATC
GATA
AAGG
AAGA
CTAA
TAGC
TATC
TCAG
TTCG
GTTC
GGTT
GGTA
CGAC
TAAA
GCCA
ATTC
TGAA
AAAT
TTCT
ATGA
AGGA
TTGT
TACT
CTGA
GAGG
GTTA
GTAA
GCCC
TAAG
AGGT
TGGT
TGCT
CGCT
GTCT
TTAA
TAGG
GCCG
GGCT
TATG
TCAC
TGTT
GTCC
CAGT
AAGC
GCTG
TGAC
TTCA
GAAA
CTGG
CAAA
CCGA
ACAT
CCGC
ATTA
CATG
CGAA
AATG
CTTT
TGCC
TTAG
GCTA
AACG
GCGA
GACA
CACT
ATTAT
TTTAG
TCTAT
TGGAT
ATAGG
AGAGA
AGTAG
AGATA
AAAGA
GTGGG
AGGAT
ACACC
CTCAA
TTGAT
AATTA
TCTTA
ATTTC
CGGGG
CGAGT
CTCTT
AAGTT
TAAAA
GTCTG
CAATT
ATAGT
GGGCC
CTTTA
AACTT
GATTA
ATGAC
TCGAT
GGAAG
TTTCC
CCGCT
TAATA
GAATG
TTTAA
CTCCC
TAAGT
ATACA
CAACC
GCTGG
TAACT
GCCGA
CCCAA
TATCA
TTCGA
AATAA
TTTAT
ACGAG
ACTTT
TGGAA
CGGCC
CACTG
TGCCC
TCACT
TTAAC
GCCTA
TTCCA
GCCAA
GAAAT
CCGAT
AGGGG
ATTGT
TCTGA
ATATT
TCAAT
ATGGG
CCTAT
CTTTT
CATAT
GCTCA
GTTTT
GTCTA
GACTA
CTTGA
ATTTT
TCATT
CTAAT
TTTGG
CTGGG
GTAAT
GCCCG
GCGCC
CAATG
CATCT
ATCCT
ACTAA
TTCTC
TTCCC
GATAC
CCAAA
ATTGG
CACTA
AAATA
TGCTT
TGAAG
TCCTG
GCAGG
TATAC
CCCAG
ATATG
AGGCT
TTTTG
CACTC
AGCCC
CACAC
TAGGA
GTTAA
TCTTG
TTAAA
CTAGG
AACAA
GATAT
GCTTT
CATTG
GAGGG
ATTCT
CTACT
AGTTA
TACCC
ATTTA
GAATA
CCTGG
TACTA
TTGAA
TAGAG
TTCGT
GCATT
GTGTA
AAACA
TGTGT
TATAT
CAAAA
ATCAA
CCCCA
TGTAT
TACAG
ATAAC
TTATG
TGTTT
TTGCA
TGAAT
GTGAG
ATTAG
ATATA
CCCTT
TATAG
GTAGA
TTTGA
TTCTT
ATACT
GTATT
AATGG
TAATG
TACTG
CCATT
CAAAC
CGTAC
ATAAA
GCGAC
TAGTA
CCTAC
CATAA
AAAGG
CTTAA
AAATG
TTACT
TAGGC
GAGAT
AGGAC
TGAGC
AAGAG
GGGGT
TATTT
TTAGT
GTTAG
TTAAT
TGGGA
GGGAA
CTTAG
CAAAG
CAGTC
AGAGG
CTAAA
AGTTT
CCGCC
CCCAC
TTTTC
TCATA
TTCAA
TTCTA
GTTTA
ACGAA
AATGC
TAATC
CTCGG
AGCGA
AATCA
TCTAA
GGCAG
TCAAC
CTTAC
ATAAG
AATAG
TATCT
TTAAG
ATCCA
ATTCC
TATGA
TTTAC
TAACA
GCAAT
AATTG
GGAGG
AAGGA
TTCAT
CTACG
ATGAA
TGCAA
ACTGA
AAAAC
GTGCA
TAAGC
CAAAT
AATTC
TTTGT
CTAGT
TTATC
ACTTC
ACTTA
CTGCA
TAGCA
GGAAA
AGCTA
GAGAG
CATGA
GGTTT
CTATG
CACCT
AAAAG
TAGAA
CGGGC
CTAAC
ATCTT
GCTTG
GGAAT
ATCTA
TCAAG
TCCTA
ATGGA
CCACT
TCTGC
ATTAA
ACTAG
TTTCA
TCTTT
GCGTA
CTAAG
AACTA
CAGTG
GTGCT
GATCC
TGTCT
AATGA
CTTTC
GATGG
AATTT
AGGGA
CTACA
GTGCC
TAGCC
GAATT
ATCCC
ATGCA
CCCTC
AGCCT
ATCTG
GAGAA
TAGCT
ATTTG
AATAT
ATAGA
AGAAA
GTAAA
GATAA
TTACA
GATCA
GCGTT
AAAAT
TAAGA
TCTCT
TATTC
CCTTC
TGGAG
CAATA
TGCAT
GGGCT
AGTCT
CTCTC
ATTAC
GCCCC
AGGAA
AAATT
AGTAT
ACCTT
ACCCA
TGCTA
TATGG
CAGCG
CTAGA
TCGCT
TCTCC
GCAAA
ATATC
AGTGC
TTTCT
ACAAA
GATTC
CCAAC
ACCAT
TCCAT
AGTAA
TACAA
GCTCT
CCTTA
ATACC
CATTC
TCCCT
TTATT
AAAGT
ATCAT
ACTAT
TCCTC
AGGAG
AGAAT
AAGGG
CAGGA
TTTTA
TAATT
CCTCT
TTTGC
CTCCA
AAGTA
GAAAG
ATGAG
CAGCC
TAGAT
ACCGT
TAGTG
CTTTG
TAAAT
TTATA
AGAAC
TATTG
TCTAG
GTTCA
CTCTA
CCTGC
GTATA
TTGGA
CCTTT
ACTTG
CTATT
GACTG
AGATT
CTTCT
ATGTA
CTATC
TCCCC
ATGTT
TCAAA
TCCAA
TAAAG
TGCAG
GAAGC
GAAAA
GTACT
GAATC
TAAAC
CGCTA
TCCGC
GAATGG
TTAAGA
AAAAGT
ACCTGA
TGTTTT
TTAATT
CTTTCT
ACTATA
CGCACA
ACACCC
TAAGTA
CTTCAA
TATAGA
AAAGCT
CTTAAT
AGAAAA
CATATA
GACTGA
GTTTAT
GGAAAG
TCCCCT
ACGTAC
AATACC
CATTTC
TAATCT
TACGCA
ACCTTA
ACTACC
TGTATT
AAAAAT
ATCTAT
TTCAAT
CTAAAA
TCGCTT
GTGTGA
TAGGAG
GGGAAA
AAATTC
ATTTTA
TATAAT
TGTGTA
AATTAT
TTCCAT
CTTTAT
TACATA
TATAAG
AATTTA
TGAACC
TAATTG
TTTGTT
GTGTAT
GCTGAC
GGTAGG
GCACAC
ACATGC
TATCTA
AATGAA
AGCTTT
TCTAAC
AATATC
TTTATC
TTTCTT
GATTAA
GTGTAC
ATCTCA
TAAATA
TCTTAT
AAATAA
ATACGA
CACTTA
TCTAAG
TCGGTC
ACTTTA
AGTTAG
CCGTGC
CTCTCC
TTTAAA
ATGTAA
AAATGA
TAGTTT
GTTATA
ACACGT
CTAATT
GCCTGG
TTATAT
TCCTTA
TAGCCC
AGCAGA
CAATGT
ATATCC
AATTTT
GTTTTT
AAACTA
GAACAG
TCCAAT
GCACAT
TAAAAG
ATAAAA
ATAAGG
TAAGGA
GTGAAA
CTATGG
TATTAA
TTAATA
CAGTAG
GTTTTA
TTAAAA
ATTGAT
AAATAC
CACGTA
GTTTTG
CACATG
ATAAAT
ATTTAT
ATAAGA
AGATAA
ATAGAG
TTCATT
TCTTTG
ATATCT
TACTCC
CCGGCA
TTTTGT
GTTATT
TCACTA
TAACAC
AGGATT
AATCTT
CTAAGT
TTAAGT
AAATTT
TTTTTA
GGATAT
CTATTT
TACTTT
ACACAT
TAAATT
TATAAA
TATTTT
CTCTCG
TATTAC
TAACCT
CTGACT
CATACG
TCTCTT
ATCAAA
TTATGA
TTTTCT
GGGGGA
GGCGGA
ATGTTG
TTAAAT
TTTAAT
ATAGAA
TATTGG
GTACAG
AAGGGA
ATGAGG
ATACTA
TCCTAC
TGCCGG
TTAATG
CGTACA
TAATAT
ACGCTA
TAAGAT
ACCATA
CTATAA
ATTAAG
ATAATT
AAATCT
TTTTTG
ATAGGA
GAGCCT
ATTGTA
CCTTCC
ATATAA
ATTTTT
ATGGAA
CTGAAA
ATGTAT
ATTAGT
TCCTAT
TCATTA
CCCTTA
AATTAA
CCCCTC
TAGGGT
TTACTT
CTAAAT
CTTATC
GATTTA
TAACTT
TATAGG
GCATAC
ATTTTC
TAAGAG
ATACAC
TGATTA
AAGAAT
CTTCTG
ATCATA
TAAAAT
ATTAAA
ACCTCT
AAAATT
CAATTA
AAAACA
TTTTAA
TAAAGA
CCCTTC
TAATTA
ATTCTG
AAGATA
AGTAGG
TTTGAT
GCAGGT
TTGGTG
CGGAGG
ATATTT
GCCCCA
TATAAC
TCTTTC
CATTGG
GAATAA
AGATAT
TCTTTT
CTTTCC
TATAGT
ACGCAC
CCCCAC
AATATA
AGTATC
TAAACC
AAAGTA
TACTCA
TCTAAT
ATAATC
AATATT
ATCTTG
TAGCTA
AAATTA
AACTTT
ATACTT
GGTTTA
TTTTAT
ATACGG
AAAATA
CTTGCT
ATGAGT
GTACTA
AGGCAG
TTCTAT
GAGAAT
CATATG
TGAGTT
TAGATG
GTACGT
CCCTCA
ATATTA
CAGGGC
TAGCTT
AAGGAA
TACTTA
CTTAGT
ACAAAA
AAAGAA
CTGTTT
ATTATC
TTATAA
TGTATA
ATTACT
GCTGTT
CATAAT
CACACC
TGCTTC
TAAAGC
TAATGT
ACCTAC
CTAGCC
TAATAC
CCTCAT
AAATAT
TATATT
TACTAT
AGTGAA
TTCTTT
ACGCAT
AGGGAA
GTAGCA
TCCTTG
CAACAC
ACGTGT
CACGCA
AGGACA
TTAGAT
TTCCTT
CTAATA
ATTGAA
TTAGAA
TTCTCT
CCTATA
AAAAAC
TCAGGC
TTTTCC
TTACTA
GTCTAC
ACACGC
TACTAG
ATCTAA
CGAGAG
AGGAGT
ATTCAG
CTTTTC
AATCCT
CCCAAA
ATTCTA
ATACCC
ACATAC
TATTCT
ATATAC
CCTTCT
TAATTT
CCATTT
AGTAAT
TCATTC
TAGAGA
ATAATG
GGAAGG
ACACTA
GTAGAA
AACTCA
GTTTAG
CATGCA
TGTACG
CGTGTA
TATGAA
TAACTA
ACAGTA
TTCTTA
TTCTGG
TATGGT
TACTAA
TTAATC
AATCAG
TAGAAC
ACAAAC
AGAGGA
GCAAAG
TCCTGC
AATTGC
GTTGAG
GAAAAA
ACTAAT
GATTTT
ATTATA
ATGGTA
CTTTAG
TCTTTA
TTATAG
CCAGAA
AATCTA
CCTTAT
ATTCAA
ATATTC
AAAAAG
ACCCTT
GTCCTC
TGTTGG
TTGAAG
TACACG
GTACAC
ACACTC
ATTAAT
CTTTAA
ATAGTA
CACTTT
ACCCAA
AATGAG
TAATGC
TTCCTC
ATTACC
TTTTAC
TACTTC
ATCATT
TGCACA
AATAGG
GCCTAG
TTCCAA
TATTAG
TGCCAT
ACCCTA
CTAGCA
AATAAA
TCTACT
CCCTAG
GAAAAG
TTTCAA
CAAGCG
TTTAAC
ATTTAG
ACTTAG
ATACAT
GAATAT
ACCCAC
AGTATA
TGTAAT
TGTATG
TAAAAA
TACACA
TTATTT
AGCAGG
TTTCAC
TTTGAC
TAAGTT
GAGAAA
TGCCGA
GAATCT
GAGTAG
AAAAGA
CTTCTA
CCTAGG
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