Chloroplast Motifs - Imperfect TTTTA Repeats
| S.No | Sequence ID | Motif | Iterations | Start | End | Tract Length | Sequence Name |
| 1 | NC_009808 | TTTTA | 7 | 161658 | 161692 | 35 | Ipomoea purpurea chloroplast |
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| 2 | NC_005353 | TTTTA | 5 | 158366 | 158389 | 24 | Chlamydomonas reinhardtii chloroplast |
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| 3 | NC_015139 | TTTTA | 4 | 63790 | 63809 | 20 | Brassica rapa subsp. pekinensis chloroplast |
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| 4 | NC_015308 | TTTTA | 4 | 25556 | 25574 | 19 | Hevea brasiliensis chloroplast |
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| 5 | NC_015308 | TTTTA | 4 | 81370 | 81388 | 19 | Hevea brasiliensis chloroplast |
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| 6 | NC_015820 | TTTTA | 4 | 31867 | 31885 | 19 | Acidosasa purpurea chloroplast |
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| 7 | NC_015983 | TTTTA | 4 | 33080 | 33100 | 21 | Cucumis melo subsp. melo chloroplast |
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| 8 | NC_016068 | TTTTA | 4 | 48207 | 48226 | 20 | Nicotiana undulata chloroplast |
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| 9 | NC_016734 | TTTTA | 4 | 63630 | 63649 | 20 | Brassica napus chloroplast |
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| 10 | NC_021111 | TTTTA | 4 | 96302 | 96321 | 20 | Cistanche deserticola chloroplast |
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| 11 | NC_021423 | TTTTA | 4 | 84354 | 84372 | 19 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
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| 12 | NC_021455 | TTTTA | 4 | 22539 | 22558 | 20 | Prinsepia utilis plastid |
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| 13 | NC_021760 | TTTTA | 4 | 58107 | 58125 | 19 | Triticum monococcum chloroplast |
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| 14 | NC_021761 | TTTTA | 4 | 57839 | 57857 | 19 | Secale cereale chloroplast |
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| 15 | NC_021762 | TTTTA | 4 | 57783 | 57801 | 19 | Triticum urartu chloroplast |
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| 16 | NC_022133 | TTTTA | 4 | 56916 | 56934 | 19 | Aegilops tauschii chloroplast |
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| 17 | NC_022135 | TTTTA | 4 | 57056 | 57074 | 19 | Aegilops speltoides isolate SPE0661 chloroplast |
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| 18 | NC_000932 | TTTTA | 4 | 52184 | 52202 | 19 | Arabidopsis thaliana chloroplast |
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| 19 | NC_001319 | TTTTA | 4 | 74612 | 74630 | 19 | Marchantia polymorpha chloroplast |
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| 20 | NC_001865 | TTTTA | 4 | 94700 | 94718 | 19 | Chlorella vulgaris chloroplast |
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| 21 | NC_002762 | TTTTA | 4 | 57478 | 57496 | 19 | Triticum aestivum chloroplast |
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| 22 | NC_004561 | TTTTA | 4 | 47878 | 47897 | 20 | Atropa belladonna chloroplast |
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| 23 | NC_005086 | TTTTA | 4 | 49914 | 49932 | 19 | Amborella trichopoda chloroplast |
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| 24 | NC_005087 | TTTTA | 4 | 15862 | 15880 | 19 | Physcomitrella patens subsp. patens chloroplast |
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| 25 | NC_007499 | TTTTA | 4 | 49919 | 49937 | 19 | Phalaenopsis aphrodite subsp. formosana chloroplast |
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| 26 | NC_009273 | TTTTA | 4 | 56557 | 56575 | 19 | Lepidium virginicum chloroplast |
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| 27 | NC_009274 | TTTTA | 4 | 54959 | 54978 | 20 | Lobularia maritima chloroplast |
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| 28 | NC_010433 | TTTTA | 4 | 50424 | 50442 | 19 | Manihot esculenta chloroplast |
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| 29 | NC_011031 | TTTTA | 4 | 71627 | 71646 | 20 | Oedogonium cardiacum chloroplast |
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| 30 | NC_014063 | TTTTA | 4 | 113875 | 113894 | 20 | Lathyrus sativus chloroplast |
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| 31 | NC_014346 | TTTTA | 3 | 437155 | 437169 | 15 | Floydiella terrestris chloroplast |
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| 32 | NC_014346 | TTTTA | 3 | 455615 | 455629 | 15 | Floydiella terrestris chloroplast |
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| 33 | NC_014573 | TTTTA | 3 | 55044 | 55057 | 14 | Geranium palmatum plastid |
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| 34 | NC_014675 | TTTTA | 3 | 73241 | 73255 | 15 | Isoetes flaccida chloroplast |
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| 35 | NC_014807 | TTTTA | 3 | 34933 | 34947 | 15 | Corynocarpus laevigata chloroplast |
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| 36 | NC_015139 | TTTTA | 3 | 62120 | 62133 | 14 | Brassica rapa subsp. pekinensis chloroplast |
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| 37 | NC_015204 | TTTTA | 3 | 4944 | 4958 | 15 | Gossypium thurberi chloroplast |
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| 38 | NC_015401 | TTTTA | 3 | 54552 | 54565 | 14 | Olea europaea subsp. europaea plastid |
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| 39 | NC_015604 | TTTTA | 3 | 54550 | 54563 | 14 | Olea europaea subsp. cuspidata chloroplast |
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| 40 | NC_015605 | TTTTA | 3 | 30659 | 30673 | 15 | Nelumbo lutea chloroplast |
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| 41 | NC_015608 | TTTTA | 3 | 54621 | 54634 | 14 | Olea woodiana subsp. woodiana chloroplast |
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| 42 | NC_015623 | TTTTA | 3 | 54563 | 54576 | 14 | Olea europaea subsp. maroccana chloroplast |
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| 43 | NC_015645 | TTTTA | 3 | 865 | 878 | 14 | Schizomeris leibleinii chloroplast |
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| 44 | NC_015645 | TTTTA | 3 | 101838 | 101851 | 14 | Schizomeris leibleinii chloroplast |
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| 45 | NC_015892 | TTTTA | 3 | 48389 | 48402 | 14 | Magnolia kwangsiensis chloroplast |
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| 46 | NC_015983 | TTTTA | 3 | 66995 | 67009 | 15 | Cucumis melo subsp. melo chloroplast |
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| 47 | NC_016065 | TTTTA | 3 | 77287 | 77301 | 15 | Taiwania cryptomerioides chloroplast DNA |
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| 48 | NC_016468 | TTTTA | 3 | 125977 | 125990 | 14 | Boea hygrometrica chloroplast |
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| 49 | NC_016668 | TTTTA | 3 | 4861 | 4875 | 15 | Gossypium raimondii chloroplast |
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| 50 | NC_016670 | TTTTA | 3 | 4946 | 4960 | 15 | Gossypium darwinii chloroplast |
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| 51 | NC_016670 | TTTTA | 3 | 30035 | 30049 | 15 | Gossypium darwinii chloroplast |
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| 52 | NC_016690 | TTTTA | 3 | 4939 | 4953 | 15 | Gossypium tomentosum chloroplast |
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| 53 | NC_016692 | TTTTA | 3 | 4931 | 4945 | 15 | Gossypium herbaceum subsp. africanum chloroplast |
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| 54 | NC_016711 | TTTTA | 3 | 4925 | 4939 | 15 | Gossypium mustelinum chloroplast |
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| 55 | NC_016712 | TTTTA | 3 | 4931 | 4945 | 15 | Gossypium arboreum chloroplast |
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| 56 | NC_016729 | TTTTA | 3 | 50344 | 50358 | 15 | Silene conica chloroplast |
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| 57 | NC_016730 | TTTTA | 3 | 168 | 182 | 15 | Silene latifolia chloroplast |
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| 58 | NC_016732 | TTTTA | 3 | 24832 | 24845 | 14 | Dunaliella salina chloroplast |
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| 59 | NC_016732 | TTTTA | 3 | 80099 | 80112 | 14 | Dunaliella salina chloroplast |
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| 60 | NC_016732 | TTTTA | 3 | 227754 | 227767 | 14 | Dunaliella salina chloroplast |
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| 61 | NC_016735 | TTTTA | 3 | 41130 | 41145 | 16 | Fucus vesiculosus chloroplast |
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| 62 | NC_016736 | TTTTA | 3 | 14311 | 14325 | 15 | Ricinus communis chloroplast |
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| 63 | NC_016753 | TTTTA | 3 | 7367 | 7382 | 16 | Colocasia esculenta chloroplast |
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| 64 | NC_017894 | TTTTA | 3 | 4880 | 4894 | 15 | Gossypium gossypioides chloroplast |
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| 65 | NC_017928 | TTTTA | 3 | 22827 | 22840 | 14 | Plasmodium falciparum HB3 apicoplast |
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| 66 | NC_018109 | TTTTA | 3 | 4871 | 4885 | 15 | Gossypium incanum chloroplast |
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| 67 | NC_018110 | TTTTA | 3 | 4893 | 4907 | 15 | Gossypium somalense chloroplast |
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| 68 | NC_018112 | TTTTA | 3 | 4893 | 4907 | 15 | Gossypium areysianum chloroplast |
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| 69 | NC_018113 | TTTTA | 3 | 5050 | 5064 | 15 | Gossypium robinsonii chloroplast |
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| 70 | NC_018114 | TTTTA | 3 | 73680 | 73694 | 15 | Erycina pusilla chloroplast |
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| 71 | NC_018117 | TTTTA | 3 | 14723 | 14737 | 15 | Datura stramonium chloroplast |
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| 72 | NC_018552 | TTTTA | 3 | 128983 | 128996 | 14 | Capsicum annuum chloroplast |
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| 73 | NC_019650 | TTTTA | 3 | 58054 | 58068 | 15 | Festuca pratensis plastid |
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| 74 | NC_019651 | TTTTA | 3 | 57994 | 58008 | 15 | Lolium multiflorum plastid |
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| 75 | NC_020014 | TTTTA | 3 | 71928 | 71941 | 14 | Nannochloropsis gaditana chloroplast |
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| 76 | NC_020018 | TTTTA | 3 | 13626 | 13640 | 15 | Monomorphina aenigmatica strain UTEX1284 chloroplast |
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| 77 | NC_020019 | TTTTA | 3 | 128594 | 128607 | 14 | Camellia sinensis chloroplast |
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| 78 | NC_020019 | TTTTA | 3 | 129105 | 129118 | 14 | Camellia sinensis chloroplast |
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| 79 | NC_020146 | TTTTA | 3 | 29097 | 29110 | 14 | Equisetum hyemale chloroplast |
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| 80 | NC_020316 | TTTTA | 3 | 48569 | 48582 | 14 | Magnolia officinalis chloroplast |
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| 81 | NC_020317 | TTTTA | 3 | 48560 | 48573 | 14 | Magnolia officinalis subsp. biloba voucher SC001 chloroplast |
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| 82 | NC_020321 | TTTTA | 3 | 41490 | 41504 | 15 | Taxus mairei voucher NN014 chloroplast |
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| 83 | NC_020363 | TTTTA | 3 | 79871 | 79885 | 15 | Zingiber spectabile plastid |
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| 84 | NC_020438 | TTTTA | 3 | 28771 | 28784 | 14 | Gonium pectorale chloroplast |
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| 85 | NC_020438 | TTTTA | 3 | 32823 | 32836 | 14 | Gonium pectorale chloroplast |
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| 86 | NC_020438 | TTTTA | 3 | 94238 | 94252 | 15 | Gonium pectorale chloroplast |
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| 87 | NC_020438 | TTTTA | 3 | 128822 | 128835 | 14 | Gonium pectorale chloroplast |
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| 88 | NC_020438 | TTTTA | 3 | 195443 | 195457 | 15 | Gonium pectorale chloroplast |
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| 89 | NC_020460 | TTTTA | 3 | 9555 | 9569 | 15 | Euglena viridis culture-collection ATCC:PRA110 chloroplast |
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| 90 | NC_020460 | TTTTA | 3 | 20439 | 20454 | 16 | Euglena viridis culture-collection ATCC:PRA110 chloroplast |
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| 91 | NC_021075 | TTTTA | 3 | 127369 | 127382 | 14 | Calliarthron tuberculosum chloroplast |
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| 92 | NC_021109 | TTTTA | 3 | 3381 | 3394 | 14 | Pleodorina starrii plastid |
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| 93 | NC_021109 | TTTTA | 3 | 268680 | 268694 | 15 | Pleodorina starrii plastid |
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| 94 | NC_021423 | TTTTA | 3 | 43350 | 43365 | 16 | Catharanthus roseus cultivar Pacifica Punch Halo chloroplast |
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| 95 | NC_021426 | TTTTA | 3 | 7005 | 7018 | 14 | Trochodendron aralioides chloroplast |
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| 96 | NC_021426 | TTTTA | 3 | 116361 | 116375 | 15 | Trochodendron aralioides chloroplast |
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| 97 | NC_021430 | TTTTA | 3 | 81172 | 81187 | 16 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
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| 98 | NC_021430 | TTTTA | 3 | 83336 | 83350 | 15 | Cymbidium sinense voucher KUN:YJB100605 chloroplast |
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| 99 | NC_021431 | TTTTA | 3 | 81226 | 81241 | 16 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
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| 100 | NC_021431 | TTTTA | 3 | 83390 | 83404 | 15 | Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast |
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| 101 | NC_021437 | TTTTA | 3 | 68677 | 68690 | 14 | Cunninghamia lanceolata chloroplast |
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| 102 | NC_021437 | TTTTA | 3 | 121208 | 121221 | 14 | Cunninghamia lanceolata chloroplast |
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| 103 | NC_021441 | TTTTA | 3 | 76333 | 76347 | 15 | Taiwania flousiana chloroplast |
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| 104 | NC_021618 | TTTTA | 3 | 172725 | 172738 | 14 | Grateloupia taiwanensis plastid |
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| 105 | NC_021647 | TTTTA | 3 | 24807 | 24820 | 14 | Glycine canescens voucher CSIRO:G1232 chloroplast |
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| 106 | NC_021936 | TTTTA | 3 | 31027 | 31040 | 14 | Najas flexilis chloroplast |
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| 107 | NC_001319 | TTTTA | 3 | 59167 | 59181 | 15 | Marchantia polymorpha chloroplast |
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| 108 | NC_001568 | TTTTA | 3 | 48119 | 48132 | 14 | Epifagus virginiana chloroplast |
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| 109 | NC_001631 | TTTTA | 3 | 15223 | 15236 | 14 | Pinus thunbergii chloroplast |
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| 110 | NC_001713 | TTTTA | 3 | 54204 | 54218 | 15 | Odontella sinensis chloroplast |
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| 111 | NC_001799 | TTTTA | 3 | 12161 | 12175 | 15 | Toxoplasma gondii RH apicoplast |
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| 112 | NC_001865 | TTTTA | 3 | 6826 | 6839 | 14 | Chlorella vulgaris chloroplast |
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| 113 | NC_001865 | TTTTA | 3 | 29340 | 29353 | 14 | Chlorella vulgaris chloroplast |
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| 114 | NC_001865 | TTTTA | 3 | 60271 | 60285 | 15 | Chlorella vulgaris chloroplast |
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| 115 | NC_001865 | TTTTA | 3 | 95418 | 95431 | 14 | Chlorella vulgaris chloroplast |
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| 116 | NC_002652 | TTTTA | 3 | 24061 | 24076 | 16 | Euglena longa plastid |
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| 117 | NC_002652 | TTTTA | 3 | 73057 | 73071 | 15 | Euglena longa plastid |
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| 118 | NC_002694 | TTTTA | 3 | 109983 | 109997 | 15 | Lotus japonicus chloroplast |
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| 119 | NC_004115 | TTTTA | 3 | 57148 | 57162 | 15 | Chaetosphaeridium globosum chloroplast |
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| 120 | NC_004115 | TTTTA | 3 | 115843 | 115857 | 15 | Chaetosphaeridium globosum chloroplast |
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| 121 | NC_005087 | TTTTA | 3 | 11774 | 11788 | 15 | Physcomitrella patens subsp. patens chloroplast |
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| 122 | NC_005087 | TTTTA | 3 | 19190 | 19204 | 15 | Physcomitrella patens subsp. patens chloroplast |
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| 123 | NC_005087 | TTTTA | 3 | 56051 | 56065 | 15 | Physcomitrella patens subsp. patens chloroplast |
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| 124 | NC_005087 | TTTTA | 3 | 67713 | 67727 | 15 | Physcomitrella patens subsp. patens chloroplast |
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| 125 | NC_005087 | TTTTA | 3 | 107482 | 107495 | 14 | Physcomitrella patens subsp. patens chloroplast |
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| 126 | NC_005353 | TTTTA | 3 | 133681 | 133695 | 15 | Chlamydomonas reinhardtii chloroplast |
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| 127 | NC_005353 | TTTTA | 3 | 192978 | 192991 | 14 | Chlamydomonas reinhardtii chloroplast |
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| 128 | NC_006137 | TTTTA | 3 | 62962 | 62975 | 14 | Gracilaria tenuistipitata var. liui chloroplast |
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| 129 | NC_007144 | TTTTA | 3 | 125108 | 125121 | 14 | Cucumis sativus chloroplast |
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| 130 | NC_007898 | TTTTA | 3 | 127931 | 127944 | 14 | Solanum lycopersicum chloroplast |
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| 131 | NC_007932 | TTTTA | 3 | 44897 | 44911 | 15 | Porphyra yezoensis chloroplast |
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| 132 | NC_007943 | TTTTA | 3 | 127837 | 127850 | 14 | Solanum bulbocastanum chloroplast |
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| 133 | NC_007944 | TTTTA | 3 | 4939 | 4953 | 15 | Gossypium hirsutum chloroplast |
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| 134 | NC_007944 | TTTTA | 3 | 30039 | 30053 | 15 | Gossypium hirsutum chloroplast |
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| 135 | NC_007977 | TTTTA | 3 | 47577 | 47590 | 14 | Helianthus annuus chloroplast |
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| 136 | NC_008096 | TTTTA | 3 | 127790 | 127803 | 14 | Solanum tuberosum chloroplast |
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| 137 | NC_008097 | TTTTA | 3 | 123188 | 123202 | 15 | Chara vulgaris chloroplast |
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| 138 | NC_008100 | TTTTA | 3 | 32481 | 32496 | 16 | Helicosporidium sp. ex Simulium jonesii plastid |
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| 139 | NC_008101 | TTTTA | 3 | 114790 | 114804 | 15 | Scenedesmus obliquus chloroplast |
|---|
| 140 | NC_008372 | TTTTA | 3 | 1321 | 1336 | 16 | Stigeoclonium helveticum chloroplast |
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| 141 | NC_008372 | TTTTA | 3 | 51770 | 51783 | 14 | Stigeoclonium helveticum chloroplast |
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| 142 | NC_008372 | TTTTA | 3 | 51926 | 51939 | 14 | Stigeoclonium helveticum chloroplast |
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| 143 | NC_008372 | TTTTA | 3 | 96733 | 96747 | 15 | Stigeoclonium helveticum chloroplast |
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| 144 | NC_008372 | TTTTA | 3 | 203335 | 203349 | 15 | Stigeoclonium helveticum chloroplast |
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| 145 | NC_008408 | TTTTA | 3 | 59523 | 59536 | 14 | Bigelowiella natans plastid |
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| 146 | NC_008454 | TTTTA | 3 | 50662 | 50675 | 14 | Pelargonium x hortorum chloroplast |
|---|
| 147 | NC_008456 | TTTTA | 3 | 23576 | 23591 | 16 | Drimys granadensis chloroplast |
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| 148 | NC_008590 | TTTTA | 3 | 58242 | 58255 | 14 | Hordeum vulgare subsp. vulgare chloroplast |
|---|
| 149 | NC_008641 | TTTTA | 3 | 4950 | 4964 | 15 | Gossypium barbadense chloroplast |
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| 150 | NC_008641 | TTTTA | 3 | 30037 | 30051 | 15 | Gossypium barbadense chloroplast |
|---|
| 151 | NC_008788 | TTTTA | 3 | 131117 | 131130 | 14 | Nuphar advena chloroplast |
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| 152 | NC_009259 | TTTTA | 3 | 121254 | 121267 | 14 | Phaseolus vulgaris chloroplast |
|---|
| 153 | NC_009274 | TTTTA | 3 | 4625 | 4639 | 15 | Lobularia maritima chloroplast |
|---|
| 154 | NC_009275 | TTTTA | 3 | 124647 | 124660 | 14 | Nasturtium officinale chloroplast |
|---|
| 155 | NC_009275 | TTTTA | 3 | 126994 | 127007 | 14 | Nasturtium officinale chloroplast |
|---|
| 156 | NC_009599 | TTTTA | 3 | 117076 | 117090 | 15 | Buxus microphylla chloroplast |
|---|
| 157 | NC_009618 | TTTTA | 3 | 10088 | 10101 | 14 | Cycas taitungensis chloroplast |
|---|
| 158 | NC_009681 | TTTTA | 3 | 108132 | 108145 | 14 | Leptosira terrestris chloroplast |
|---|
| 159 | NC_009681 | TTTTA | 3 | 113943 | 113957 | 15 | Leptosira terrestris chloroplast |
|---|
| 160 | NC_009681 | TTTTA | 3 | 187228 | 187242 | 15 | Leptosira terrestris chloroplast |
|---|
| 161 | NC_009950 | TTTTA | 3 | 58077 | 58091 | 15 | Lolium perenne chloroplast |
|---|
| 162 | NC_010772 | TTTTA | 3 | 92443 | 92458 | 16 | Heterosigma akashiwo chloroplast |
|---|
| 163 | NC_011031 | TTTTA | 3 | 97417 | 97431 | 15 | Oedogonium cardiacum chloroplast |
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| 164 | NC_011031 | TTTTA | 3 | 136715 | 136728 | 14 | Oedogonium cardiacum chloroplast |
|---|
| 165 | NC_011031 | TTTTA | 3 | 159976 | 159990 | 15 | Oedogonium cardiacum chloroplast |
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| 166 | NC_011159 | TTTTA | 3 | 102028 | 102042 | 15 | Pinus nelsonii chloroplast |
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| 167 | NC_011395 | TTTTA | 3 | 21830 | 21843 | 14 | Babesia bovis T2Bo apicoplast |
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| 168 | NC_011600 | TTTTA | 3 | 20950 | 20963 | 14 | Vaucheria litorea chloroplast |
|---|
| 169 | NC_011600 | TTTTA | 3 | 88568 | 88582 | 15 | Vaucheria litorea chloroplast |
|---|
| 170 | NC_011713 | TTTTA | 3 | 58610 | 58624 | 15 | Festuca arundinacea chloroplast |
|---|
| 171 | NC_011828 | TTTTA | 3 | 119299 | 119312 | 14 | Trifolium subterraneum chloroplast |
|---|
| 172 | NC_011954 | TTTTA | 3 | 61265 | 61279 | 15 | Ephedra equisetina chloroplast |
|---|
| 173 | NC_012052 | TTTTA | 3 | 71953 | 71966 | 14 | Syntrichia ruralis chloroplast |
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| 174 | NC_013086 | TTTTA | 3 | 26214 | 26227 | 14 | Selaginella moellendorffii plastid |
|---|
| 175 | NC_013359 | TTTTA | 3 | 97868 | 97881 | 14 | Bryopsis hypnoides chloroplast |
|---|
| 176 | NC_013359 | TTTTA | 3 | 139846 | 139860 | 15 | Bryopsis hypnoides chloroplast |
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| 177 | NC_013359 | TTTTA | 3 | 141889 | 141903 | 15 | Bryopsis hypnoides chloroplast |
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| 178 | NC_013498 | TTTTA | 3 | 38038 | 38052 | 15 | Ectocarpus siliculosus chloroplast |
|---|
| 179 | NC_013823 | TTTTA | 3 | 32320 | 32334 | 15 | Typha latifolia chloroplast |
|---|
| 180 | NC_013991 | TTTTA | 3 | 84438 | 84452 | 15 | Phoenix dactylifera chloroplast |
|---|
| 181 | NC_013707 | TTTTA | 3 | 54527 | 54540 | 14 | Olea europaea chloroplast |
|---|