ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Mitochondria Motifs - Perfect TCTT Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_016017	TCTT	5	11439	11458	20	Stenopirates sp. HL-2011 mitochondrion
2	NC_014050	TCTT	4	295181	295196	16	Cucurbita pepo mitochondrion
3	NC_014050	TCTT	4	496929	496944	16	Cucurbita pepo mitochondrion
4	NC_014050	TCTT	4	707213	707228	16	Cucurbita pepo mitochondrion
5	NC_014050	TCTT	4	778950	778965	16	Cucurbita pepo mitochondrion
6	NC_014050	TCTT	4	884252	884267	16	Cucurbita pepo mitochondrion
7	NC_016005	TCTT	4	438292	438307	16	Cucumis sativus mitochondrion chromosome 1
8	NC_016291	TCTT	4	77672	77687	16	Silene conica mitochondrion chromosome 71
9	NC_021754	TCTT	4	14454	14469	16	Pachygrapsus crassipes mitochondrion
10	NC_001284	TCTT	3	306645	306656	12	Arabidopsis thaliana mitochondrion
11	NC_001284	TCTT	3	308331	308342	12	Arabidopsis thaliana mitochondrion
12	NC_006581	TCTT	3	63788	63799	12	Nicotiana tabacum mitochondrion
13	NC_006581	TCTT	3	414538	414549	12	Nicotiana tabacum mitochondrion
14	NC_007982	TCTT	3	185570	185581	12	Zea mays subsp. mays mitochondrion
15	NC_007982	TCTT	3	390114	390125	12	Zea mays subsp. mays mitochondrion
16	NC_008331	TCTT	3	391042	391053	12	Zea perennis mitochondrion
17	NC_008332	TCTT	3	30928	30939	12	Zea mays subsp. parviglumis mitochondrion
18	NC_008332	TCTT	3	413251	413262	12	Zea mays subsp. parviglumis mitochondrion
19	NC_008333	TCTT	3	35319	35330	12	Zea luxurians mitochondrion
20	NC_008333	TCTT	3	186328	186339	12	Zea luxurians mitochondrion
21	NC_008333	TCTT	3	332097	332108	12	Zea luxurians mitochondrion
22	NC_008360	TCTT	3	174045	174056	12	Sorghum bicolor mitochondrion
23	NC_008360	TCTT	3	306931	306942	12	Sorghum bicolor mitochondrion
24	NC_008362	TCTT	3	596273	596284	12	Tripsacum dactyloides mitochondrion
25	NC_008362	TCTT	3	621669	621680	12	Tripsacum dactyloides mitochondrion
26	NC_010303	TCTT	3	293100	293111	12	Cycas taitungensis mitochondrion
27	NC_010303	TCTT	3	326848	326859	12	Cycas taitungensis mitochondrion
28	NC_010303	TCTT	3	372275	372286	12	Cycas taitungensis mitochondrion
29	NC_012116	TCTT	3	7292	7303	12	Carica papaya mitochondrion
30	NC_012116	TCTT	3	107933	107944	12	Carica papaya mitochondrion
31	NC_012116	TCTT	3	166955	166966	12	Carica papaya mitochondrion
32	NC_012119	TCTT	3	139484	139495	12	Vitis vinifera mitochondrion
33	NC_012119	TCTT	3	383592	383603	12	Vitis vinifera mitochondrion
34	NC_012651	TCTT	3	57370	57381	12	Megaceros aenigmaticus mitochondrion
35	NC_013147	TCTT	3	58855	58866	12	Dekkera bruxellensis mitochondrion
36	NC_013816	TCTT	3	315347	315358	12	Oryza rufipogon mitochondrion
37	NC_013816	TCTT	3	383869	383880	12	Oryza rufipogon mitochondrion
38	NC_014043	TCTT	3	225817	225828	12	Citrullus lanatus mitochondrion
39	NC_014050	TCTT	3	12152	12163	12	Cucurbita pepo mitochondrion
40	NC_014050	TCTT	3	79076	79087	12	Cucurbita pepo mitochondrion
41	NC_014050	TCTT	3	349857	349868	12	Cucurbita pepo mitochondrion
42	NC_014050	TCTT	3	351956	351967	12	Cucurbita pepo mitochondrion
43	NC_014050	TCTT	3	379220	379231	12	Cucurbita pepo mitochondrion
44	NC_014050	TCTT	3	386722	386733	12	Cucurbita pepo mitochondrion
45	NC_014050	TCTT	3	390935	390946	12	Cucurbita pepo mitochondrion
46	NC_014050	TCTT	3	423636	423647	12	Cucurbita pepo mitochondrion
47	NC_014050	TCTT	3	488582	488593	12	Cucurbita pepo mitochondrion
48	NC_014050	TCTT	3	490264	490275	12	Cucurbita pepo mitochondrion
49	NC_014050	TCTT	3	571491	571502	12	Cucurbita pepo mitochondrion
50	NC_014050	TCTT	3	625964	625975	12	Cucurbita pepo mitochondrion
51	NC_014050	TCTT	3	711381	711392	12	Cucurbita pepo mitochondrion
52	NC_014050	TCTT	3	796358	796369	12	Cucurbita pepo mitochondrion
53	NC_014050	TCTT	3	900539	900550	12	Cucurbita pepo mitochondrion
54	NC_014050	TCTT	3	920039	920050	12	Cucurbita pepo mitochondrion
55	NC_014590	TCTT	3	8596	8607	12	Musculista senhousia mitochondrion
56	NC_014668	TCTT	3	15106	15117	12	Helicoverpa armigera mitochondrion
57	NC_014848	TCTT	3	340	351	12	Hypsibius dujardini mitochondrion
58	NC_014887	TCTT	3	15017	15028	12	Acrida cinerea mitochondrion
59	NC_015099	TCTT	3	300960	300971	12	Beta vulgaris subsp. maritima mitochondrion
60	NC_015141	TCTT	3	142437	142448	12	Ricinus communis mitochondrion
61	NC_015141	TCTT	3	161568	161579	12	Ricinus communis mitochondrion
62	NC_015141	TCTT	3	432990	433001	12	Ricinus communis mitochondrion
63	NC_015994	TCTT	3	300923	300934	12	Beta macrocarpa mitochondrion
64	NC_016005	TCTT	3	56691	56702	12	Cucumis sativus mitochondrion chromosome 1
65	NC_016005	TCTT	3	111567	111578	12	Cucumis sativus mitochondrion chromosome 1
66	NC_016005	TCTT	3	140497	140508	12	Cucumis sativus mitochondrion chromosome 1
67	NC_016005	TCTT	3	172973	172984	12	Cucumis sativus mitochondrion chromosome 1
68	NC_016005	TCTT	3	446240	446251	12	Cucumis sativus mitochondrion chromosome 1
69	NC_016005	TCTT	3	659922	659933	12	Cucumis sativus mitochondrion chromosome 1
70	NC_016005	TCTT	3	681116	681127	12	Cucumis sativus mitochondrion chromosome 1
71	NC_016005	TCTT	3	747496	747507	12	Cucumis sativus mitochondrion chromosome 1
72	NC_016005	TCTT	3	836107	836118	12	Cucumis sativus mitochondrion chromosome 1
73	NC_016005	TCTT	3	884657	884668	12	Cucumis sativus mitochondrion chromosome 1
74	NC_016005	TCTT	3	923928	923939	12	Cucumis sativus mitochondrion chromosome 1
75	NC_016005	TCTT	3	947250	947261	12	Cucumis sativus mitochondrion chromosome 1
76	NC_016005	TCTT	3	1064349	1064360	12	Cucumis sativus mitochondrion chromosome 1
77	NC_016005	TCTT	3	1209480	1209491	12	Cucumis sativus mitochondrion chromosome 1
78	NC_016005	TCTT	3	1343264	1343275	12	Cucumis sativus mitochondrion chromosome 1
79	NC_016005	TCTT	3	1343331	1343342	12	Cucumis sativus mitochondrion chromosome 1
80	NC_016005	TCTT	3	1343471	1343482	12	Cucumis sativus mitochondrion chromosome 1
81	NC_016005	TCTT	3	1353131	1353142	12	Cucumis sativus mitochondrion chromosome 1
82	NC_016005	TCTT	3	1505900	1505911	12	Cucumis sativus mitochondrion chromosome 1
83	NC_016120	TCTT	3	82588	82599	12	Brassica carinata mitochondrion
84	NC_016177	TCTT	3	21741	21752	12	Silene conica mitochondrion chromosome 87
85	NC_016177	TCTT	3	24181	24192	12	Silene conica mitochondrion chromosome 87
86	NC_016207	TCTT	3	51562	51573	12	Silene conica mitochondrion chromosome 110
87	NC_016212	TCTT	3	11757	11768	12	Silene conica mitochondrion chromosome 5
88	NC_016216	TCTT	3	1998	2009	12	Silene conica mitochondrion chromosome 28
89	NC_016216	TCTT	3	58884	58895	12	Silene conica mitochondrion chromosome 28
90	NC_016218	TCTT	3	60176	60187	12	Silene conica mitochondrion chromosome 9
91	NC_016218	TCTT	3	90054	90065	12	Silene conica mitochondrion chromosome 9
92	NC_016218	TCTT	3	105346	105357	12	Silene conica mitochondrion chromosome 9
93	NC_016219	TCTT	3	25134	25145	12	Silene conica mitochondrion chromosome 27
94	NC_016219	TCTT	3	69154	69165	12	Silene conica mitochondrion chromosome 27
95	NC_016220	TCTT	3	127927	127938	12	Silene conica mitochondrion chromosome 4
96	NC_016221	TCTT	3	43481	43492	12	Silene conica mitochondrion chromosome 3
97	NC_016221	TCTT	3	58007	58018	12	Silene conica mitochondrion chromosome 3
98	NC_016221	TCTT	3	97702	97713	12	Silene conica mitochondrion chromosome 3
99	NC_016222	TCTT	3	11108	11119	12	Silene conica mitochondrion chromosome 64
100	NC_016223	TCTT	3	109093	109104	12	Silene conica mitochondrion chromosome 6
101	NC_016223	TCTT	3	130671	130682	12	Silene conica mitochondrion chromosome 6
102	NC_016224	TCTT	3	33786	33797	12	Silene conica mitochondrion chromosome 115
103	NC_016224	TCTT	3	45193	45204	12	Silene conica mitochondrion chromosome 115
104	NC_016224	TCTT	3	50465	50476	12	Silene conica mitochondrion chromosome 115
105	NC_016225	TCTT	3	63317	63328	12	Silene conica mitochondrion chromosome 23
106	NC_016225	TCTT	3	72659	72670	12	Silene conica mitochondrion chromosome 23
107	NC_016225	TCTT	3	85135	85146	12	Silene conica mitochondrion chromosome 23
108	NC_016225	TCTT	3	87233	87244	12	Silene conica mitochondrion chromosome 23
109	NC_016226	TCTT	3	30144	30155	12	Silene conica mitochondrion chromosome 12
110	NC_016226	TCTT	3	39487	39498	12	Silene conica mitochondrion chromosome 12
111	NC_016226	TCTT	3	51963	51974	12	Silene conica mitochondrion chromosome 12
112	NC_016226	TCTT	3	54061	54072	12	Silene conica mitochondrion chromosome 12
113	NC_016227	TCTT	3	8924	8935	12	Silene conica mitochondrion chromosome 11
114	NC_016227	TCTT	3	21400	21411	12	Silene conica mitochondrion chromosome 11
115	NC_016227	TCTT	3	23498	23509	12	Silene conica mitochondrion chromosome 11
116	NC_016228	TCTT	3	62399	62410	12	Silene conica mitochondrion chromosome 14
117	NC_016230	TCTT	3	60973	60984	12	Silene conica mitochondrion chromosome 2
118	NC_016230	TCTT	3	112673	112684	12	Silene conica mitochondrion chromosome 2
119	NC_016231	TCTT	3	47916	47927	12	Silene conica mitochondrion chromosome 16
120	NC_016231	TCTT	3	56376	56387	12	Silene conica mitochondrion chromosome 16
121	NC_016232	TCTT	3	13567	13578	12	Silene conica mitochondrion chromosome 13
122	NC_016234	TCTT	3	14975	14986	12	Silene conica mitochondrion chromosome 20
123	NC_016235	TCTT	3	24140	24151	12	Silene conica mitochondrion chromosome 7
124	NC_016235	TCTT	3	93610	93621	12	Silene conica mitochondrion chromosome 7
125	NC_016237	TCTT	3	92637	92648	12	Silene conica mitochondrion chromosome 44
126	NC_016239	TCTT	3	2511	2522	12	Silene conica mitochondrion chromosome 94
127	NC_016242	TCTT	3	55869	55880	12	Silene conica mitochondrion chromosome 30
128	NC_016242	TCTT	3	58495	58506	12	Silene conica mitochondrion chromosome 30
129	NC_016249	TCTT	3	44675	44686	12	Silene conica mitochondrion chromosome 1
130	NC_016249	TCTT	3	47771	47782	12	Silene conica mitochondrion chromosome 1
131	NC_016249	TCTT	3	99100	99111	12	Silene conica mitochondrion chromosome 1
132	NC_016249	TCTT	3	161949	161960	12	Silene conica mitochondrion chromosome 1
133	NC_016250	TCTT	3	63125	63136	12	Silene conica mitochondrion chromosome 34
134	NC_016251	TCTT	3	33672	33683	12	Silene conica mitochondrion chromosome 22
135	NC_016253	TCTT	3	35580	35591	12	Silene conica mitochondrion chromosome 50
136	NC_016257	TCTT	3	80577	80588	12	Silene conica mitochondrion chromosome 54
137	NC_016258	TCTT	3	32119	32130	12	Silene conica mitochondrion chromosome 53
138	NC_016261	TCTT	3	11154	11165	12	Silene conica mitochondrion chromosome 41
139	NC_016265	TCTT	3	34344	34355	12	Silene conica mitochondrion chromosome 77
140	NC_016266	TCTT	3	55867	55878	12	Silene conica mitochondrion chromosome 80
141	NC_016266	TCTT	3	70843	70854	12	Silene conica mitochondrion chromosome 80
142	NC_016268	TCTT	3	50240	50251	12	Silene conica mitochondrion chromosome 84
143	NC_016271	TCTT	3	71757	71768	12	Silene conica mitochondrion chromosome 78
144	NC_016272	TCTT	3	46363	46374	12	Silene conica mitochondrion chromosome 8
145	NC_016274	TCTT	3	64246	64257	12	Silene conica mitochondrion chromosome 79
146	NC_016278	TCTT	3	7387	7398	12	Silene conica mitochondrion chromosome 10
147	NC_016280	TCTT	3	17067	17078	12	Silene conica mitochondrion chromosome 98
148	NC_016280	TCTT	3	49898	49909	12	Silene conica mitochondrion chromosome 98
149	NC_016281	TCTT	3	46049	46060	12	Silene conica mitochondrion chromosome 85
150	NC_016289	TCTT	3	53202	53213	12	Silene conica mitochondrion chromosome 68
151	NC_016294	TCTT	3	20064	20075	12	Silene conica mitochondrion chromosome 119
152	NC_016294	TCTT	3	24924	24935	12	Silene conica mitochondrion chromosome 119
153	NC_016296	TCTT	3	11479	11490	12	Silene conica mitochondrion chromosome 122
154	NC_016297	TCTT	3	31469	31480	12	Silene conica mitochondrion chromosome 123
155	NC_016298	TCTT	3	3652	3663	12	Silene conica mitochondrion chromosome 43
156	NC_016298	TCTT	3	30332	30343	12	Silene conica mitochondrion chromosome 43
157	NC_016302	TCTT	3	37206	37217	12	Silene conica mitochondrion chromosome 32
158	NC_016302	TCTT	3	39510	39521	12	Silene conica mitochondrion chromosome 32
159	NC_016302	TCTT	3	39668	39679	12	Silene conica mitochondrion chromosome 32
160	NC_016302	TCTT	3	43852	43863	12	Silene conica mitochondrion chromosome 32
161	NC_016302	TCTT	3	59205	59216	12	Silene conica mitochondrion chromosome 32
162	NC_016303	TCTT	3	100966	100977	12	Silene conica mitochondrion chromosome 33
163	NC_016304	TCTT	3	4602	4613	12	Silene conica mitochondrion chromosome 76
164	NC_016307	TCTT	3	51182	51193	12	Silene conica mitochondrion chromosome 117
165	NC_016308	TCTT	3	40287	40298	12	Silene conica mitochondrion chromosome 17
166	NC_016308	TCTT	3	50974	50985	12	Silene conica mitochondrion chromosome 17
167	NC_016309	TCTT	3	123	134	12	Silene conica mitochondrion chromosome 120
168	NC_016309	TCTT	3	1303	1314	12	Silene conica mitochondrion chromosome 120
169	NC_016309	TCTT	3	24091	24102	12	Silene conica mitochondrion chromosome 120
170	NC_016309	TCTT	3	54930	54941	12	Silene conica mitochondrion chromosome 120
171	NC_016311	TCTT	3	39159	39170	12	Silene conica mitochondrion chromosome 45
172	NC_016314	TCTT	3	30820	30831	12	Silene conica mitochondrion chromosome 29
173	NC_016315	TCTT	3	27477	27488	12	Silene conica mitochondrion chromosome 128
174	NC_016316	TCTT	3	24940	24951	12	Silene conica mitochondrion chromosome 89
175	NC_016317	TCTT	3	46731	46742	12	Silene conica mitochondrion chromosome 91
176	NC_016319	TCTT	3	36766	36777	12	Silene conica mitochondrion chromosome 100
177	NC_016320	TCTT	3	3381	3392	12	Silene conica mitochondrion chromosome 81
178	NC_016320	TCTT	3	56456	56467	12	Silene conica mitochondrion chromosome 81
179	NC_016325	TCTT	3	73053	73064	12	Silene conica mitochondrion chromosome 61
180	NC_016326	TCTT	3	793	804	12	Silene conica mitochondrion chromosome 121
181	NC_016327	TCTT	3	3655	3666	12	Silene conica mitochondrion chromosome 96
182	NC_016327	TCTT	3	18260	18271	12	Silene conica mitochondrion chromosome 96
183	NC_016329	TCTT	3	15392	15403	12	Silene conica mitochondrion chromosome 47
184	NC_016329	TCTT	3	54631	54642	12	Silene conica mitochondrion chromosome 47
185	NC_016330	TCTT	3	19684	19695	12	Silene conica mitochondrion chromosome 116
186	NC_016335	TCTT	3	470	481	12	Silene conica mitochondrion
187	NC_016339	TCTT	3	15205	15216	12	Silene conica mitochondrion chromosome 49
188	NC_016341	TCTT	3	2106	2117	12	Silene conica mitochondrion chromosome 46
189	NC_016341	TCTT	3	17398	17409	12	Silene conica mitochondrion chromosome 46
190	NC_016345	TCTT	3	17712	17723	12	Silene noctiflora mitochondrion chromosome 12
191	NC_016346	TCTT	3	90290	90301	12	Silene noctiflora mitochondrion chromosome 17
192	NC_016346	TCTT	3	110083	110094	12	Silene noctiflora mitochondrion chromosome 17
193	NC_016347	TCTT	3	18108	18119	12	Silene noctiflora mitochondrion chromosome 36
194	NC_016348	TCTT	3	44433	44444	12	Silene noctiflora mitochondrion chromosome 3
195	NC_016365	TCTT	3	1027	1038	12	Silene noctiflora mitochondrion chromosome 16
196	NC_016367	TCTT	3	60435	60446	12	Silene noctiflora mitochondrion chromosome 52
197	NC_016370	TCTT	3	18533	18544	12	Silene noctiflora mitochondrion chromosome 37
198	NC_016372	TCTT	3	17903	17914	12	Silene noctiflora mitochondrion chromosome 5
199	NC_016372	TCTT	3	31941	31952	12	Silene noctiflora mitochondrion chromosome 5
200	NC_016376	TCTT	3	63685	63696	12	Silene noctiflora mitochondrion chromosome 42
201	NC_016382	TCTT	3	49391	49402	12	Silene noctiflora mitochondrion chromosome 9
202	NC_016384	TCTT	3	113511	113522	12	Silene noctiflora mitochondrion chromosome 15
203	NC_016390	TCTT	3	16166	16177	12	Silene noctiflora mitochondrion chromosome 8
204	NC_016397	TCTT	3	123564	123575	12	Silene noctiflora mitochondrion chromosome 4
205	NC_016406	TCTT	3	4506	4517	12	Silene vulgaris mitochondrion chromosome 1
206	NC_016684	TCTT	3	34452	34463	12	Gigaspora margarita mitochondrion
207	NC_016740	TCTT	3	28961	28972	12	Phoenix dactylifera mitochondrion
208	NC_016741	TCTT	3	81265	81276	12	Boea hygrometrica mitochondrion
209	NC_016741	TCTT	3	179529	179540	12	Boea hygrometrica mitochondrion
210	NC_016741	TCTT	3	318879	318890	12	Boea hygrometrica mitochondrion
211	NC_016743	TCTT	3	146188	146199	12	Lotus japonicus mitochondrion
212	NC_017855	TCTT	3	173962	173973	12	Daucus carota subsp. sativus mitochondrion
213	NC_017874	TCTT	3	2733	2744	12	Nectonemertes cf. mirabilis HC-2011 mitochondrion
214	NC_017874	TCTT	3	5292	5303	12	Nectonemertes cf. mirabilis HC-2011 mitochondrion
215	NC_018041	TCTT	3	376062	376073	12	Mimulus guttatus mitochondrion
216	NC_018041	TCTT	3	441425	441436	12	Mimulus guttatus mitochondrion
217	NC_018551	TCTT	3	176545	176556	12	Raphanus sativus mitochondrion
218	NC_018554	TCTT	3	230701	230712	12	Malus x domestica mitochondrion
219	NC_020343	TCTT	3	3426	3437	12	Placida sp. 1 NY-2013 mitochondrion
220	NC_020370	TCTT	3	3071	3082	12	Ministeria vibrans mitochondrion
221	NC_020455	TCTT	3	226518	226529	12	Glycine max mitochondrion
222	NC_020455	TCTT	3	240253	240264	12	Glycine max mitochondrion
223	NC_021124	TCTT	3	47524	47535	12	Andalucia godoyi strain ATCC PRA-185 mitochondrion
224	NC_021463	TCTT	3	2198	2209	12	Botryllus schlosseri complete mitochondrial genome
225	NC_021620	TCTT	3	5835	5846	12	Eleutheronema tetradactylum mitochondrion
226	NC_002782	TCTT	3	16762	16773	12	Apteryx haastii mitochondrion
227	NC_005055	TCTT	3	14635	14646	12	Fejervarya limnocharis mitochondrion
228	NC_005438	TCTT	3	1160	1171	12	Gomphiocephalus hodgsoni mitochondrion
229	NC_009984	TCTT	3	13427	13438	12	Nothopuga sp. 1 LP-2008 mitochondrion
230	NC_011303	TCTT	3	15019	15030	12	Acrida willemsei mitochondrion
231	NC_013976	TCTT	3	10489	10500	12	Eophreatoicus sp. 14 FK-2009 mitochondrion

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Mitochondria Motifs - Perfect TCTT Repeats