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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Perfect (TTTA) Repeats

S.NoSequence IDSSRSSR TypeTract LengthStartEndSequence Name
1NC_022136(TTTA)3p4125776257773Lygodium japonicum chloroplast
2NC_021650(TTTA)3p412117807117818Glycine syndetika voucher CSIRO:G1300 chloroplast
3NC_021649(TTTA)3p412118038118049Glycine falcata voucher CSIRO:G1718 chloroplast
4NC_021648(TTTA)3p412117791117802Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
5NC_021647(TTTA)3p412117550117561Glycine canescens voucher CSIRO:G1232 chloroplast
6NC_021636(TTTA)3p412117748117759Glycine tomentella voucher CSIRO:G1403 chloroplast
7NC_021618(TTTA)3p4127175771768Grateloupia taiwanensis plastid
8NC_021455(TTTA)3p41250405051Prinsepia utilis plastid
9NC_021455(TTTA)3p4126665766668Prinsepia utilis plastid
10NC_021455(TTTA)3p4128343983450Prinsepia utilis plastid
11NC_021449(TTTA)3p4124979549806Utricularia gibba chloroplast
12NC_021440(TTTA)3p4124214642157Pinus taeda chloroplast
13NC_021439(TTTA)3p4124140841419Pinus massoniana chloroplast
14NC_021438(TTTA)3p4121386113872Gnetum montanum chloroplast
15NC_021426(TTTA)3p4128600686017Trochodendron aralioides chloroplast
16NC_021423(TTTA)3p4124715247163Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
17NC_021372(TTTA)3p4127435474365Pharus latifolius chloroplast
18NC_021101(TTTA)3p4124389843909Francoa sonchifolia plastid
19NC_021101(TTTA)3p4124488944900Francoa sonchifolia plastid
20NC_021075(TTTA)3p4129546595476Calliarthron tuberculosum chloroplast
21NC_021075(TTTA)3p4129878398794Calliarthron tuberculosum chloroplast
22NC_020438(TTTA)3p412135259135270Gonium pectorale chloroplast
23NC_020371(TTTA)3p4128246782478Pavlova lutheri chloroplast
24NC_020367(TTTA)3p4121309113102Dasypogon bromeliifolius plastid
25NC_020366(TTTA)3p4128476584776Bismarckia nobilis plastid
26NC_020366(TTTA)3p412121170121181Bismarckia nobilis plastid
27NC_020365(TTTA)3p412120271120282Calamus caryotoides plastid
28NC_020365(TTTA)3p412123416123427Calamus caryotoides plastid
29NC_020364(TTTA)3p4125840658417Pseudophoenix vinifera plastid
30NC_020364(TTTA)3p412120755120766Pseudophoenix vinifera plastid
31NC_020362(TTTA)3p412125288125299Heliconia collinsiana plastid
32NC_020321(TTTA)3p4129709597106Taxus mairei voucher NN014 chloroplast
33NC_020152(TTTA)3p4125299853009Quercus rubra plastid
34NC_020147(TTTA)3p412112370112381Ophioglossum californicum chloroplast
35NC_020146(TTTA)3p4128857288583Equisetum hyemale chloroplast
36NC_018767(TTTA)3p412109801109812Fragaria mandshurica plastid
37NC_018117(TTTA)3p4123095430965Datura stramonium chloroplast
38NC_018113(TTTA)3p412129634129645Gossypium robinsonii chloroplast
39NC_018112(TTTA)3p412129309129320Gossypium areysianum chloroplast
40NC_018111(TTTA)3p412129153129164Gossypium capitis-viridis chloroplast
41NC_018110(TTTA)3p412129277129288Gossypium somalense chloroplast
42NC_018109(TTTA)3p412128976128987Gossypium incanum chloroplast
43NC_017835(TTTA)3p4127170571716Oryza rufipogon chloroplast
44NC_017754(TTTA)3p4125621056221Eutreptiella gymnastica plastid
45NC_017602(TTTA)3p412120122120133Elaeis guineensis chloroplast
46NC_017006(TTTA)3p41272407251Mankyua chejuensis chloroplast
47NC_016927(TTTA)3p4127171671727Oryza meridionalis chloroplast
48NC_016921(TTTA)3p4123067430685Pentactina rupicola chloroplast
49NC_016921(TTTA)3p412109383109394Pentactina rupicola chloroplast
50NC_016736(TTTA)3p4123498234993Ricinus communis chloroplast
51NC_016736(TTTA)3p4127039370404Ricinus communis chloroplast
52NC_016734(TTTA)3p41268466857Brassica napus chloroplast
53NC_016730(TTTA)3p4124471944730Silene latifolia chloroplast
54NC_016729(TTTA)3p4126505565066Silene conica chloroplast
55NC_016728(TTTA)3p4125702457035Silene noctiflora chloroplast
56NC_016718(TTTA)3p4127320473215Rhynchoryza subulata plastid
57NC_016712(TTTA)3p412129876129887Gossypium arboreum chloroplast
58NC_016711(TTTA)3p412129974129985Gossypium mustelinum chloroplast
59NC_016692(TTTA)3p412129958129969Gossypium herbaceum subsp. africanum chloroplast
60NC_016690(TTTA)3p412130084130095Gossypium tomentosum chloroplast
61NC_016677(TTTA)3p41241544165Leersia tisserantii plastid
62NC_016670(TTTA)3p412130042130053Gossypium darwinii chloroplast
63NC_016668(TTTA)3p412129856129867Gossypium raimondii chloroplast
64NC_016068(TTTA)3p4123111931130Nicotiana undulata chloroplast
65NC_016063(TTTA)3p4129082990840Cephalotaxus wilsoniana chloroplast DNA
66NC_015996(TTTA)3p4123187031881Pyrus pyrifolia chloroplast
67NC_015996(TTTA)3p412112237112248Pyrus pyrifolia chloroplast
68NC_015983(TTTA)3p4122865228663Cucumis melo subsp. melo chloroplast
69NC_015899(TTTA)3p4124607246083Wolffia australiana chloroplast
70NC_015891(TTTA)3p4128710687117Spirodela polyrhiza chloroplast
71NC_015645(TTTA)3p4125039350404Schizomeris leibleinii chloroplast
72NC_015645(TTTA)3p4129927799288Schizomeris leibleinii chloroplast
73NC_015308(TTTA)3p4125443054441Hevea brasiliensis chloroplast
74NC_015308(TTTA)5p4206952169540Hevea brasiliensis chloroplast
75NC_015308(TTTA)3p4128138581396Hevea brasiliensis chloroplast
76NC_015206(TTTA)3p412109739109750Fragaria vesca subsp. vesca chloroplast
77NC_015139(TTTA)3p41268526863Brassica rapa subsp. pekinensis chloroplast
78NC_015113(TTTA)3p412118647118658Anthriscus cerefolium chloroplast
79NC_015083(TTTA)3p4124898448995Erodium carvifolium chloroplast
80NC_015083(TTTA)3p4128699887009Erodium carvifolium chloroplast
81NC_014808(TTTA)3p41238973908Thalassiosira oceanica CCMP1005 chloroplast
82NC_014808(TTTA)3p4125445954470Thalassiosira oceanica CCMP1005 chloroplast
83NC_014699(TTTA)3p4129309893109Equisetum arvense chloroplast
84NC_014697(TTTA)3p4123078130792Prunus persica chloroplast
85NC_014676(TTTA)3p4125181051821Theobroma cacao chloroplast
86NC_014676(TTTA)3p4125229852309Theobroma cacao chloroplast
87NC_014674(TTTA)3p4125299253003Castanea mollissima chloroplast
88NC_014573(TTTA)3p412103126103137Geranium palmatum plastid
89NC_014287(TTTA)3p4121045410465Durinskia baltica chloroplast
90NC_014267(TTTA)3p4125502355034Kryptoperidinium foliaceum chloroplast
91NC_013991(TTTA)3p412121263121274 Phoenix dactylifera chloroplast
92NC_013991(TTTA)3p412121263121274 Phoenix dactylifera chloroplast
93NC_013498(TTTA)3p412137394137405 Ectocarpus siliculosus chloroplast
94NC_013273(TTTA)3p41241654176 Coix lacryma-jobi chloroplast
95NC_012927(TTTA)3p4127396173972 Bambusa oldhamii chloroplast
96NC_012224(TTTA)3p4125595155962 Jatropha curcas chloroplast
97NC_012052(TTTA)3p412121980121991 Syntrichia ruralis chloroplast
98NC_012052(TTTA)3p4125916859179 Syntrichia ruralis chloroplast
99NC_011828(TTTA)3p4122834428355 Trifolium subterraneum chloroplast
100NC_011600(TTTA)3p4127610876119 Vaucheria litorea chloroplast
101NC_011600(TTTA)3p4125263452645 Vaucheria litorea chloroplast
102NC_011159(TTTA)3p4124110341114 Pinus nelsonii chloroplast
103NC_011155(TTTA)3p4124097240983 Pinus krempfii chloroplast
104NC_011154(TTTA)5p4204107341092 Pinus gerardiana chloroplast
105NC_011153(TTTA)3p4124165241663 Pinus contorta chloroplast
106NC_011087(TTTA)3p412517927517938Paulinella chromatophora chromatophore
107NC_011031(TTTA)3p412173939173950 Oedogonium cardiacum chloroplast
108NC_010772(TTTA)3p412131306131317 Heterosigma akashiwo chloroplast
109NC_010772(TTTA)3p4124125541266 Heterosigma akashiwo chloroplast
110NC_010548(TTTA)3p412122307122318 Cryptomeria japonica chloroplast
111NC_010362(TTTA)3p4127168871699 Oenothera parviflora chloroplast
112NC_010361(TTTA)3p4127280872819 Oenothera biennis chloroplast
113NC_010361(TTTA)3p41248904901 Oenothera biennis chloroplast
114NC_010360(TTTA)3p4127338173392 Oenothera glazioviana chloroplast
115NC_010358(TTTA)3p4127230572316 Oenothera argillicola chloroplast
116NC_010109(TTTA)3p4123135231363 Lemna minor chloroplast
117NC_010109(TTTA)3p41280628073 Lemna minor chloroplast
118NC_009962(TTTA)3p4122292822939 Ceratophyllum demersum chloroplast
119NC_009949(TTTA)4p4162155421569 Cuscuta obtusiflora chloroplast
120NC_009949(TTTA)3p4124697846989 Cuscuta obtusiflora chloroplast
121NC_009766(TTTA)3p41257535764 Cuscuta reflexa chloroplast
122NC_009766(TTTA)3p41239944005 Cuscuta reflexa chloroplast
123NC_009681(TTTA)3p4128971889729 Leptosira terrestris chloroplast
124NC_009600(TTTA)3p412102348102359 Illicium oligandrum chloroplast
125NC_009599(TTTA)3p4125180251813 Buxus microphylla chloroplast
126NC_009598(TTTA)3p412129299129310 Chloranthus spicatus chloroplast
127NC_009274(TTTA)3p4127712377134 Lobularia maritima chloroplast
128NC_009267(TTTA)3p41274547465 Olimarabidopsis pumila chloroplast
129NC_008822(TTTA)3p4128513185142 Chlorokybus atmophyticus chloroplast
130NC_008796(TTTA)3p41281138124 Ranunculus macranthus chloroplast
131NC_008788(TTTA)3p4123165431665 Nuphar advena chloroplast
132NC_008457(TTTA)3p4125290552916 Piper cenocladum chloroplast
133NC_008456(TTTA)3p4121384413855 Drimys granadensis chloroplast
134NC_008372(TTTA)3p412218392218403 Stigeoclonium helveticum chloroplast
135NC_008336(TTTA)3p412100473100484 Nandina domestica chloroplast
136NC_008335(TTTA)3p4126653166542 Platanus occidentalis chloroplast
137NC_008326(TTTA)3p4123807138082 Liriodendron tulipifera chloroplast
138NC_008155(TTTA)3p4127165571666 Oryza sativa Indica Group chloroplast
139NC_008116(TTTA)3p4126964869659 Staurastrum punctulatum chloroplast
140NC_008114(TTTA)3p412189754189765 Pseudendoclonium akinetum chloroplast
141NC_008114(TTTA)3p4124714447155 Pseudendoclonium akinetum chloroplast
142NC_008101(TTTA)3p412128601128612 Scenedesmus obliquus chloroplast
143NC_008101(TTTA)3p4127140871419 Scenedesmus obliquus chloroplast
144NC_008099(TTTA)4p41664306445 Oltmannsiellopsis viridis chloroplast
145NC_008097(TTTA)3p412153112153123 Chara vulgaris chloroplast
146NC_008097(TTTA)3p41253355346 Chara vulgaris chloroplast
147NC_008096(TTTA)3p4123083730848 Solanum tuberosum chloroplast
148NC_007957(TTTA)3p4125271552726 Vitis vinifera chloroplast
149NC_007944(TTTA)3p412129959129970 Gossypium hirsutum chloroplast
150NC_007943(TTTA)3p4123071830729 Solanum bulbocastanum chloroplast
151NC_007942(TTTA)3p412117184117195 Glycine max chloroplast
152NC_007898(TTTA)3p4123068930700 Solanum lycopersicum chloroplast
153NC_007758(TTTA)4p41682548269 Theileria parva strain Muguga apicoplast
154NC_007602(TTTA)3p4123104631057 Nicotiana tomentosiformis chloroplast
155NC_007500(TTTA)3p4123111131122 Nicotiana sylvestris chloroplast
156NC_007144(TTTA)3p4122866828679 Cucumis sativus chloroplast
157NC_005973(TTTA)3p4127163471645 Oryza nivara chloroplast
158NC_005087(TTTA)3p4126566265673 Physcomitrella patens subsp. patens chloroplast
159NC_005087(TTTA)3p41270107021 Physcomitrella patens subsp. patens chloroplast
160NC_004677(TTTA)3p4124123741248 Pinus koraiensis chloroplast
161NC_004561(TTTA)3p4123088130892 Atropa belladonna chloroplast
162NC_004115(TTTA)3p4128853688547 Chaetosphaeridium globosum chloroplast
163NC_003386(TTTA)3p4126662166632 Psilotum nudum chloroplast
164NC_002693(TTTA)3p4127328873299 Oenothera elata subsp. hookeri plastid plastome I
165NC_002652(TTTA)3p4127263372644 Euglena longa plastid
166NC_002652(TTTA)3p4121290912920 Euglena longa plastid
167NC_002202(TTTA)3p4126710367114 Spinacia oleracea plastid
168NC_001879(TTTA)3p4123111331124 Nicotiana tabacum plastid
169NC_001631(TTTA)3p4124145341464 Pinus thunbergii chloroplast
170NC_001568(TTTA)3p4122380323814 Epifagus virginiana chloroplast
171NC_001568(TTTA)3p4121249212503 Epifagus virginiana chloroplast
172NC_001320(TTTA)3p4127170371714 Oryza sativa Japonica Group plastid
173NC_001319(TTTA)3p4129540095411 Marchantia polymorpha chloroplast
174NC_001319(TTTA)3p4127622376234 Marchantia polymorpha chloroplast