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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Perfect (AAT) Repeats

S.NoSequence IDSSRSSR TypeTract LengthStartEndSequence Name
1NC_022135(AAT)5p3152462724641Aegilops speltoides isolate SPE0661 chloroplast
2NC_022133(AAT)5p3152466224676Aegilops tauschii chloroplast
3NC_022100(AAT)4p3122894928960Medicago truncatula cultivar Borung plastid
4NC_022100(AAT)4p3129027990290Medicago truncatula cultivar Borung plastid
5NC_022099(AAT)4p3122893728948Medicago truncatula cultivar Jemalong 2HA plastid
6NC_022099(AAT)4p3129048090491Medicago truncatula cultivar Jemalong 2HA plastid
7NC_021762(AAT)5p3152460524619Triticum urartu chloroplast
8NC_021761(AAT)5p3152465224666Secale cereale chloroplast
9NC_021760(AAT)5p3152461624630Triticum monococcum chloroplast
10NC_021650(AAT)5p3152998329997Glycine syndetika voucher CSIRO:G1300 chloroplast
11NC_021649(AAT)6p3183002130038Glycine falcata voucher CSIRO:G1718 chloroplast
12NC_021649(AAT)4p3125929059301Glycine falcata voucher CSIRO:G1718 chloroplast
13NC_021648(AAT)4p3121056210573Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
14NC_021648(AAT)5p3152998930003Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
15NC_021647(AAT)4p3122997529986Glycine canescens voucher CSIRO:G1232 chloroplast
16NC_021645(AAT)5p3152988529899Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
17NC_021637(AAT)5p3158479784811Phaeocystis globosa strain Pg-G(A) chloroplast
18NC_021636(AAT)4p3122999630007Glycine tomentella voucher CSIRO:G1403 chloroplast
19NC_021423(AAT)4p31270327043Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
20NC_021423(AAT)4p3126871368724Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
21NC_021423(AAT)4p312140154140165Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
22NC_021110(AAT)4p3121417114182Cephalotaxus oliveri chloroplast
23NC_021110(AAT)4p312124808124819Cephalotaxus oliveri chloroplast
24NC_021109(AAT)13p339115844115882Pleodorina starrii plastid
25NC_021109(AAT)4p312124278124289Pleodorina starrii plastid
26NC_021102(AAT)4p3121284112852Pachycladon cheesemanii chloroplast
27NC_021075(AAT)4p3121587915890Calliarthron tuberculosum chloroplast
28NC_021075(AAT)4p3124790547916Calliarthron tuberculosum chloroplast
29NC_020460(AAT)4p3126949569506Euglena viridis culture-collection ATCC:PRA110 chloroplast
30NC_020438(AAT)4p312220693220704Gonium pectorale chloroplast
31NC_020367(AAT)4p3128386383874Dasypogon bromeliifolius plastid
32NC_020362(AAT)4p3123292732938Heliconia collinsiana plastid
33NC_020362(AAT)4p312124543124554Heliconia collinsiana plastid
34NC_020341(AAT)4p3122661226623Arundinaria gigantea chloroplast
35NC_020321(AAT)4p3127666976680Taxus mairei voucher NN014 chloroplast
36NC_020321(AAT)5p315117104117118Taxus mairei voucher NN014 chloroplast
37NC_020318(AAT)4p312128495128506Magnolia grandiflora voucher NJ016 chloroplast
38NC_020152(AAT)4p312133439133450Quercus rubra plastid
39NC_019616(AAT)4p3125834158352Vaccinium macrocarpon plastid
40NC_019602(AAT)4p312127659127670Fragaria virginiana chloroplast
41NC_019601(AAT)4p312127641127652Fragaria chiloensis chloroplast
42NC_018767(AAT)4p312127788127799Fragaria mandshurica plastid
43NC_018766(AAT)4p312127771127782Fragaria vesca subsp. bracteata chloroplast
44NC_018565(AAT)4p3121285712868Pachycladon enysii chloroplast
45NC_018523(AAT)4p3124616446175Saccharina japonica chloroplast
46NC_018523(AAT)4p3125932459335Saccharina japonica chloroplast
47NC_018357(AAT)4p312128857128868Magnolia denudata chloroplast
48NC_018112(AAT)4p3121348413495Gossypium areysianum chloroplast
49NC_018111(AAT)4p3121353213543Gossypium capitis-viridis chloroplast
50NC_018110(AAT)4p3121348413495Gossypium somalense chloroplast
51NC_018051(AAT)5p31598939907Vigna unguiculata chloroplast
52NC_018051(AAT)4p312150777150788Vigna unguiculata chloroplast
53NC_017928(AAT)4p3121734917360Plasmodium falciparum HB3 apicoplast
54NC_017835(AAT)4p3122417824189Oryza rufipogon chloroplast
55NC_016927(AAT)4p3122418624197Oryza meridionalis chloroplast
56NC_016753(AAT)4p3123413334144Colocasia esculenta chloroplast
57NC_016734(AAT)4p3121267112682Brassica napus chloroplast
58NC_016733(AAT)4p3121996519976Pedinomonas minor chloroplast
59NC_016732(AAT)4p312130012130023Dunaliella salina chloroplast
60NC_016732(AAT)10p330248041248070Dunaliella salina chloroplast
61NC_016731(AAT)4p3121121311224Synedra acus chloroplast
62NC_016731(AAT)4p312104031104042Synedra acus chloroplast
63NC_016729(AAT)4p3122837828389Silene conica chloroplast
64NC_016728(AAT)5p31545714585Silene noctiflora chloroplast
65NC_016711(AAT)4p3121357413585Gossypium mustelinum chloroplast
66NC_016703(AAT)5p3158292882942Phaeocystis antarctica strain CCMP1374 plastid
67NC_016699(AAT)4p3122665426665Phyllostachys propinqua chloroplast
68NC_016677(AAT)4p3122550625517Leersia tisserantii plastid
69NC_016670(AAT)4p3121359713608Gossypium darwinii chloroplast
70NC_016063(AAT)4p3121427214283Cephalotaxus wilsoniana chloroplast DNA
71NC_016063(AAT)4p312126517126528Cephalotaxus wilsoniana chloroplast DNA
72NC_015831(AAT)4p3122669126702Ferrocalamus rimosivaginus plastid
73NC_015830(AAT)4p3122623026241Bambusa emeiensis chloroplast
74NC_015826(AAT)4p3122662426635Phyllostachys nigra var. henonis chloroplast
75NC_015820(AAT)4p3122666026671Acidosasa purpurea chloroplast
76NC_015817(AAT)4p3122664326654Phyllostachys edulis chloroplast
77NC_015803(AAT)4p3122661226623Indocalamus longiauritus plastid
78NC_015645(AAT)4p3126975069761Schizomeris leibleinii chloroplast
79NC_015645(AAT)4p312150962150973Schizomeris leibleinii chloroplast
80NC_015621(AAT)4p3126027060281Ageratina adenophora chloroplast
81NC_015403(AAT)4p3121887118882Fistulifera sp. JPCC DA0580 chloroplast
82NC_015206(AAT)4p312127718127729Fragaria vesca subsp. vesca chloroplast
83NC_015139(AAT)4p3121266412675Brassica rapa subsp. pekinensis chloroplast
84NC_014808(AAT)4p3128908089091Thalassiosira oceanica CCMP1005 chloroplast
85NC_014807(AAT)4p3126345463465Corynocarpus laevigata chloroplast
86NC_014699(AAT)4p3127931779328Equisetum arvense chloroplast
87NC_014676(AAT)4p3123809338104Theobroma cacao chloroplast
88NC_014676(AAT)4p3126353463545Theobroma cacao chloroplast
89NC_014674(AAT)4p312133096133107Castanea mollissima chloroplast
90NC_014582(AAT)4p3128095580966Monsonia speciosa plastid
91NC_014582(AAT)4p312119053119064Monsonia speciosa plastid
92NC_014267(AAT)5p3151506715081Kryptoperidinium foliaceum chloroplast
93NC_014057(AAT)4p312111828111839 Pisum sativum chloroplast
94NC_014057(AAT)4p312104825104836 Pisum sativum chloroplast
95NC_014057(AAT)4p312111828111839 Pisum sativum chloroplast
96NC_013991(AAT)4p3128390683917 Phoenix dactylifera chloroplast
97NC_013991(AAT)4p3128390683917 Phoenix dactylifera chloroplast
98NC_013843(AAT)5p31599179931 Vigna radiata chloroplast
99NC_013843(AAT)4p312150801150812 Vigna radiata chloroplast
100NC_013843(AAT)5p31599179931 Vigna radiata chloroplast
101NC_013843(AAT)4p312150801150812 Vigna radiata chloroplast
102NC_013823(AAT)4p312123593123604 Typha latifolia chloroplast
103NC_013823(AAT)4p3123421834229 Typha latifolia chloroplast
104NC_013823(AAT)4p3123421834229 Typha latifolia chloroplast
105NC_013823(AAT)4p312123593123604 Typha latifolia chloroplast
106NC_013088(AAT)4p3122631326324 Dendrocalamus latiflorus chloroplast
107NC_012927(AAT)4p3122616426175 Bambusa oldhamii chloroplast
108NC_012903(AAT)4p3123385833869 Aureoumbra lagunensis chloroplast
109NC_012052(AAT)4p3128306883079 Syntrichia ruralis chloroplast
110NC_012052(AAT)4p3125430254313 Syntrichia ruralis chloroplast
111NC_011163(AAT)4p3127324373254 Cicer arietinum chloroplast
112NC_011163(AAT)4p3126517265183 Cicer arietinum chloroplast
113NC_011032(AAT)4p3122451724528 Brachypodium distachyon chloroplast
114NC_011031(AAT)4p3121099311004 Oedogonium cardiacum chloroplast
115NC_010772(AAT)6p318153528153545 Heterosigma akashiwo chloroplast
116NC_010654(AAT)7p3218821388233 Welwitschia mirabilis chloroplast
117NC_010109(AAT)4p3126687366884 Lemna minor chloroplast
118NC_009275(AAT)4p3121307813089 Nasturtium officinale chloroplast
119NC_009274(AAT)4p3121213512146 Lobularia maritima chloroplast
120NC_009273(AAT)4p3121278112792 Lepidium virginicum chloroplast
121NC_009272(AAT)6p3181233312350 Draba nemorosa chloroplast
122NC_009271(AAT)4p3121276412775 Crucihimalaya wallichii chloroplast
123NC_009270(AAT)4p3121281312824 Capsella bursa-pastoris chloroplast
124NC_009269(AAT)4p3121293312944 Barbarea verna chloroplast
125NC_009268(AAT)4p3121314213153 Arabis hirsuta chloroplast
126NC_009267(AAT)4p3121285312864 Olimarabidopsis pumila chloroplast
127NC_009265(AAT)4p3121274612757 Aethionema cordifolium chloroplast
128NC_008591(AAT)4p3122485624867 Agrostis stolonifera chloroplast
129NC_008590(AAT)4p3126418864199 Hordeum vulgare subsp. vulgare chloroplast
130NC_008590(AAT)4p3122505925070 Hordeum vulgare subsp. vulgare chloroplast
131NC_008589(AAT)4p312116408116419 Thalassiosira pseudonana chloroplast
132NC_008588(AAT)4p312100132100143 Phaeodactylum tricornutum chloroplast
133NC_008457(AAT)5p315130561130575 Piper cenocladum chloroplast
134NC_008457(AAT)4p3124954449555 Piper cenocladum chloroplast
135NC_008456(AAT)4p3123107831089 Drimys granadensis chloroplast
136NC_008408(AAT)4p3124642046431 Bigelowiella natans plastid
137NC_008408(AAT)4p31283828393 Bigelowiella natans plastid
138NC_008372(AAT)5p315188183188197 Stigeoclonium helveticum chloroplast
139NC_008335(AAT)4p312133863133874 Platanus occidentalis chloroplast
140NC_008335(AAT)4p3124676446775 Platanus occidentalis chloroplast
141NC_008335(AAT)4p31249925003 Platanus occidentalis chloroplast
142NC_008334(AAT)4p312122867122878 Citrus sinensis chloroplast
143NC_008334(AAT)4p3123935639367 Citrus sinensis chloroplast
144NC_008326(AAT)4p312128799128810 Liriodendron tulipifera chloroplast
145NC_008235(AAT)5p3152995729971 Populus alba chloroplast
146NC_008155(AAT)4p3122414324154 Oryza sativa Indica Group chloroplast
147NC_008117(AAT)4p3128173981750 Zygnema circumcarinatum chloroplast
148NC_008097(AAT)4p31237513762 Chara vulgaris chloroplast
149NC_007957(AAT)4p3124099141002 Vitis vinifera chloroplast
150NC_007944(AAT)4p3121357813589 Gossypium hirsutum chloroplast
151NC_007942(AAT)4p3122962829639 Glycine max chloroplast
152NC_007932(AAT)4p312102597102608 Porphyra yezoensis chloroplast
153NC_007932(AAT)4p31235863597 Porphyra yezoensis chloroplast
154NC_007500(AAT)4p3124735847369 Nicotiana sylvestris chloroplast
155NC_006861(AAT)4p312130352130363 Huperzia lucidula chloroplast
156NC_005973(AAT)4p3122411724128 Oryza nivara chloroplast
157NC_005353(AAT)4p3121585015861 Chlamydomonas reinhardtii chloroplast
158NC_004993(AAT)4p312124517124528 Calycanthus floridus var. glaucus chloroplast
159NC_004766(AAT)4p3121488114892 Adiantum capillus-veneris chloroplast
160NC_004543(AAT)8p3248125181274 Anthoceros formosae chloroplast
161NC_003386(AAT)5p3155961459628 Psilotum nudum chloroplast
162NC_003119(AAT)4p3129048090491 Medicago truncatula chloroplast
163NC_003119(AAT)4p3122893728948 Medicago truncatula chloroplast
164NC_002762(AAT)5p3152488824902 Triticum aestivum chloroplast
165NC_002652(AAT)5p3153888438898 Euglena longa plastid
166NC_002186(AAT)4p3121372413735 Mesostigma viride chloroplast
167NC_001879(AAT)4p3124736047371 Nicotiana tabacum plastid
168NC_001840(AAT)4p3126801468025 Cyanidium caldarium chloroplast
169NC_001675(AAT)4p3125803158042 Cyanophora paradoxa cyanelle
170NC_001603(AAT)4p3123621336224 Euglena gracilis chloroplast
171NC_001320(AAT)4p3122418324194 Oryza sativa Japonica Group plastid
172NC_001319(AAT)6p3182332523342 Marchantia polymorpha chloroplast
173NC_000932(AAT)4p3121297812989 Arabidopsis thaliana chloroplast