ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Perfect (AAAT) Repeats

S.NoSequence IDSSRSSR TypeTract LengthStartEndSequence Name
1NC_021936(AAAT)3p4121627616287Najas flexilis chloroplast
2NC_021646(AAAT)3p4126968369694Glycine stenophita voucher CSIRO:G1974 chloroplast
3NC_021636(AAAT)3p4126767967690Glycine tomentella voucher CSIRO:G1403 chloroplast
4NC_021618(AAAT)3p4125665556666Grateloupia taiwanensis plastid
5NC_021455(AAAT)3p4127138871399Prinsepia utilis plastid
6NC_021433(AAAT)3p4125952059531Cymbidium mannii voucher KUN:YJB100602 chloroplast
7NC_021432(AAAT)3p4125939859409Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
8NC_021429(AAAT)3p4125977859789Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
9NC_021423(AAAT)3p412154860154871Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
10NC_021372(AAAT)4p41644564471Pharus latifolius chloroplast
11NC_021102(AAAT)3p4126442964440Pachycladon cheesemanii chloroplast
12NC_021101(AAAT)3p4123632036331Francoa sonchifolia plastid
13NC_021075(AAAT)3p41299869997Calliarthron tuberculosum chloroplast
14NC_021075(AAAT)3p412106120106131Calliarthron tuberculosum chloroplast
15NC_020607(AAAT)3p41265816592Artemisia frigida chloroplast
16NC_020460(AAAT)3p4125494454955Euglena viridis culture-collection ATCC:PRA110 chloroplast
17NC_020460(AAAT)3p4125911159122Euglena viridis culture-collection ATCC:PRA110 chloroplast
18NC_020438(AAAT)3p4122048020491Gonium pectorale chloroplast
19NC_020438(AAAT)3p412126556126567Gonium pectorale chloroplast
20NC_020363(AAAT)3p412120771120782Zingiber spectabile plastid
21NC_020363(AAAT)3p412128195128206Zingiber spectabile plastid
22NC_020362(AAAT)3p412127927127938Heliconia collinsiana plastid
23NC_020341(AAAT)3p412111749111760Arundinaria gigantea chloroplast
24NC_020320(AAAT)3p41265646575Chrysanthemum indicum voucher HeN001 chloroplast
25NC_020318(AAAT)3p412116677116688Magnolia grandiflora voucher NJ016 chloroplast
26NC_020317(AAAT)3p412117092117103Magnolia officinalis subsp. biloba voucher SC001 chloroplast
27NC_020316(AAAT)3p412117143117154Magnolia officinalis chloroplast
28NC_020152(AAAT)4p416119780119795Quercus rubra plastid
29NC_020147(AAAT)3p4128680486815Ophioglossum californicum chloroplast
30NC_020092(AAAT)3p41265826593Chrysanthemum x morifolium chloroplast
31NC_020019(AAAT)3p4126270962720Camellia sinensis chloroplast
32NC_020018(AAAT)3p4125107151082Monomorphina aenigmatica strain UTEX1284 chloroplast
33NC_020014(AAAT)3p412102174102185Nannochloropsis gaditana chloroplast
34NC_019616(AAAT)3p412147699147710Vaccinium macrocarpon plastid
35NC_018565(AAAT)3p4126475264763Pachycladon enysii chloroplast
36NC_018552(AAAT)3p412116368116379Capsicum annuum chloroplast
37NC_018541(AAAT)3p4121673516746Elodea canadensis chloroplast
38NC_018357(AAAT)4p41644014416Magnolia denudata chloroplast
39NC_018357(AAAT)3p412117043117054Magnolia denudata chloroplast
40NC_018114(AAAT)3p4124998149992Erycina pusilla chloroplast
41NC_018112(AAAT)3p41264666477Gossypium areysianum chloroplast
42NC_018111(AAAT)3p41265016512Gossypium capitis-viridis chloroplast
43NC_018110(AAAT)3p41264666477Gossypium somalense chloroplast
44NC_018109(AAAT)3p41264396450Gossypium incanum chloroplast
45NC_017602(AAAT)3p4127641776428Elaeis guineensis chloroplast
46NC_016921(AAAT)3p4127866078671Pentactina rupicola chloroplast
47NC_016735(AAAT)3p4128727187282Fucus vesiculosus chloroplast
48NC_016733(AAAT)3p4123289932910Pedinomonas minor chloroplast
49NC_016712(AAAT)3p41264996510Gossypium arboreum chloroplast
50NC_016711(AAAT)3p41264936504Gossypium mustelinum chloroplast
51NC_016699(AAAT)3p412115717115728Phyllostachys propinqua chloroplast
52NC_016692(AAAT)3p41264986509Gossypium herbaceum subsp. africanum chloroplast
53NC_016690(AAAT)3p41265076518Gossypium tomentosum chloroplast
54NC_016670(AAAT)3p41265156526Gossypium darwinii chloroplast
55NC_016468(AAAT)3p4124305343064Boea hygrometrica chloroplast
56NC_015983(AAAT)4p416152085152100Cucumis melo subsp. melo chloroplast
57NC_015892(AAAT)3p412116872116883Magnolia kwangsiensis chloroplast
58NC_015831(AAAT)3p412112228112239Ferrocalamus rimosivaginus plastid
59NC_015826(AAAT)3p412115788115799Phyllostachys nigra var. henonis chloroplast
60NC_015820(AAAT)3p412112513112524Acidosasa purpurea chloroplast
61NC_015817(AAAT)3p412112479112490Phyllostachys edulis chloroplast
62NC_015817(AAAT)3p412115693115704Phyllostachys edulis chloroplast
63NC_015803(AAAT)3p412112474112485Indocalamus longiauritus plastid
64NC_015803(AAAT)3p412115688115699Indocalamus longiauritus plastid
65NC_015645(AAAT)3p412159798159809Schizomeris leibleinii chloroplast
66NC_015621(AAAT)3p4123001830029Ageratina adenophora chloroplast
67NC_015610(AAAT)4p41649724987Nelumbo nucifera chloroplast
68NC_015605(AAAT)3p41248064817Nelumbo lutea chloroplast
69NC_015605(AAAT)3p412148165148176Nelumbo lutea chloroplast
70NC_015604(AAAT)4p41693109325Olea europaea subsp. cuspidata chloroplast
71NC_015401(AAAT)4p41693129327Olea europaea subsp. europaea plastid
72NC_015308(AAAT)3p412118728118739Hevea brasiliensis chloroplast
73NC_015204(AAAT)3p41265116522Gossypium thurberi chloroplast
74NC_014874(AAAT)3p41281468157Rhizanthella gardneri plastid
75NC_014808(AAAT)3p41236213632Thalassiosira oceanica CCMP1005 chloroplast
76NC_014808(AAAT)3p4124121541226Thalassiosira oceanica CCMP1005 chloroplast
77NC_014808(AAAT)3p412113332113343Thalassiosira oceanica CCMP1005 chloroplast
78NC_014697(AAAT)3p4127205972070Prunus persica chloroplast
79NC_014676(AAAT)3p4125054450555Theobroma cacao chloroplast
80NC_014674(AAAT)3p4123368833699Castanea mollissima chloroplast
81NC_014674(AAAT)4p416119472119487Castanea mollissima chloroplast
82NC_013707(AAAT)4p41692959310 Olea europaea chloroplast
83NC_013707(AAAT)4p41692909305 Olea europaea chloroplast
84NC_013498(AAAT)3p4122390323914 Ectocarpus siliculosus chloroplast
85NC_012224(AAAT)3p4123340433415 Jatropha curcas chloroplast
86NC_012052(AAAT)3p4127837678387 Syntrichia ruralis chloroplast
87NC_011942(AAAT)3p412110197110208 Gnetum parvifolium chloroplast
88NC_011600(AAAT)3p4123814238153 Vaucheria litorea chloroplast
89NC_011031(AAAT)3p412181506181517 Oedogonium cardiacum chloroplast
90NC_010442(AAAT)3p412131885131896 Trachelium caeruleum chloroplast
91NC_010361(AAAT)3p412118671118682 Oenothera biennis chloroplast
92NC_010360(AAAT)4p416119182119197 Oenothera glazioviana chloroplast
93NC_010323(AAAT)3p4127214572156 Carica papaya chloroplast
94NC_010093(AAAT)3p4126497964990 Acorus americanus chloroplast
95NC_009963(AAAT)3p4125026150272 Cuscuta exaltata chloroplast
96NC_009949(AAAT)3p41218491860 Cuscuta obtusiflora chloroplast
97NC_009765(AAAT)3p41218391850 Cuscuta gronovii chloroplast
98NC_009681(AAAT)3p4126760167612 Leptosira terrestris chloroplast
99NC_009681(AAAT)3p4121443214443 Leptosira terrestris chloroplast
100NC_009601(AAAT)3p41289108921 Dioscorea elephantipes chloroplast
101NC_009600(AAAT)3p412134749134760 Illicium oligandrum chloroplast
102NC_009599(AAAT)3p412143982143993 Buxus microphylla chloroplast
103NC_009273(AAAT)3p4126489764908 Lepidium virginicum chloroplast
104NC_009273(AAAT)3p4123533035341 Lepidium virginicum chloroplast
105NC_009272(AAAT)3p4126355763568 Draba nemorosa chloroplast
106NC_009269(AAAT)3p4126692266933 Barbarea verna chloroplast
107NC_009267(AAAT)3p4126739567406 Olimarabidopsis pumila chloroplast
108NC_009267(AAAT)3p4126483464845 Olimarabidopsis pumila chloroplast
109NC_009259(AAAT)3p412123891123902 Phaseolus vulgaris chloroplast
110NC_009143(AAAT)3p412141512141523 Populus trichocarpa chloroplast
111NC_008641(AAAT)3p41265196530 Gossypium barbadense chloroplast
112NC_008591(AAAT)3p4126612566136 Agrostis stolonifera chloroplast
113NC_008589(AAAT)3p412100797100808 Thalassiosira pseudonana chloroplast
114NC_008535(AAAT)3p4125813358144 Coffea arabica chloroplast
115NC_008456(AAAT)3p4127333673347 Drimys granadensis chloroplast
116NC_008372(AAAT)3p412219357219368 Stigeoclonium helveticum chloroplast
117NC_008372(AAAT)3p412207469207480 Stigeoclonium helveticum chloroplast
118NC_008372(AAAT)3p412205734205745 Stigeoclonium helveticum chloroplast
119NC_008372(AAAT)3p412190158190169 Stigeoclonium helveticum chloroplast
120NC_008372(AAAT)3p412171864171875 Stigeoclonium helveticum chloroplast
121NC_008372(AAAT)3p412165299165310 Stigeoclonium helveticum chloroplast
122NC_008372(AAAT)3p412160842160853 Stigeoclonium helveticum chloroplast
123NC_008372(AAAT)3p412158852158863 Stigeoclonium helveticum chloroplast
124NC_008372(AAAT)3p412149828149839 Stigeoclonium helveticum chloroplast
125NC_008372(AAAT)3p412143059143070 Stigeoclonium helveticum chloroplast
126NC_008372(AAAT)3p412142171142182 Stigeoclonium helveticum chloroplast
127NC_008372(AAAT)3p412124982124993 Stigeoclonium helveticum chloroplast
128NC_008372(AAAT)3p412124834124845 Stigeoclonium helveticum chloroplast
129NC_008372(AAAT)3p412118541118552 Stigeoclonium helveticum chloroplast
130NC_008372(AAAT)3p412118377118388 Stigeoclonium helveticum chloroplast
131NC_008372(AAAT)3p4129816198172 Stigeoclonium helveticum chloroplast
132NC_008372(AAAT)3p4129734197352 Stigeoclonium helveticum chloroplast
133NC_008372(AAAT)3p4129333493345 Stigeoclonium helveticum chloroplast
134NC_008372(AAAT)3p4129060590616 Stigeoclonium helveticum chloroplast
135NC_008372(AAAT)3p4129043490445 Stigeoclonium helveticum chloroplast
136NC_008372(AAAT)3p4128753287543 Stigeoclonium helveticum chloroplast
137NC_008372(AAAT)3p4127525475265 Stigeoclonium helveticum chloroplast
138NC_008372(AAAT)3p4125903359044 Stigeoclonium helveticum chloroplast
139NC_008372(AAAT)3p4125880158812 Stigeoclonium helveticum chloroplast
140NC_008372(AAAT)3p4125700657017 Stigeoclonium helveticum chloroplast
141NC_008372(AAAT)3p4125510955120 Stigeoclonium helveticum chloroplast
142NC_008372(AAAT)3p4125226352274 Stigeoclonium helveticum chloroplast
143NC_008372(AAAT)3p4124987049881 Stigeoclonium helveticum chloroplast
144NC_008372(AAAT)3p4124413644147 Stigeoclonium helveticum chloroplast
145NC_008372(AAAT)3p4124358243593 Stigeoclonium helveticum chloroplast
146NC_008372(AAAT)3p4124194141952 Stigeoclonium helveticum chloroplast
147NC_008372(AAAT)3p4124173041741 Stigeoclonium helveticum chloroplast
148NC_008359(AAAT)3p4124643446445 Morus indica chloroplast
149NC_008359(AAAT)3p4122383823849 Morus indica chloroplast
150NC_008336(AAAT)4p4161167911694 Nandina domestica chloroplast
151NC_008336(AAAT)3p412141586141597 Nandina domestica chloroplast
152NC_008335(AAAT)3p41245284539 Platanus occidentalis chloroplast
153NC_008334(AAAT)3p4127205372064 Citrus sinensis chloroplast
154NC_008334(AAAT)3p4123323233243 Citrus sinensis chloroplast
155NC_008334(AAAT)3p4123116131172 Citrus sinensis chloroplast
156NC_008235(AAAT)3p4126548765498 Populus alba chloroplast
157NC_008117(AAAT)3p412143921143932 Zygnema circumcarinatum chloroplast
158NC_008117(AAAT)3p412109995110006 Zygnema circumcarinatum chloroplast
159NC_008114(AAAT)3p412161179161190 Pseudendoclonium akinetum chloroplast
160NC_008101(AAAT)5p420113070113089 Scenedesmus obliquus chloroplast
161NC_008101(AAAT)3p4122849228503 Scenedesmus obliquus chloroplast
162NC_008100(AAAT)3p4122717827189 Helicosporidium sp. ex Simulium jonesii plastid
163NC_008099(AAAT)3p4123444634457 Oltmannsiellopsis viridis chloroplast
164NC_008097(AAAT)3p412160216160227 Chara vulgaris chloroplast
165NC_008097(AAAT)3p412106997107008 Chara vulgaris chloroplast
166NC_007944(AAAT)3p41265046515 Gossypium hirsutum chloroplast
167NC_007932(AAAT)3p412119248119259 Porphyra yezoensis chloroplast
168NC_007758(AAAT)3p4122220122212 Theileria parva strain Muguga apicoplast
169NC_007602(AAAT)3p41267206731 Nicotiana tomentosiformis chloroplast
170NC_007578(AAAT)3p4125482654837 Lactuca sativa chloroplast
171NC_007500(AAAT)3p4125678856799 Nicotiana sylvestris chloroplast
172NC_007407(AAAT)3p4126530365314 Acorus calamus plastid
173NC_007144(AAAT)4p416152176152191 Cucumis sativus chloroplast
174NC_006137(AAAT)3p4128842088431 Gracilaria tenuistipitata var. liui chloroplast
175NC_006137(AAAT)3p4122993629947 Gracilaria tenuistipitata var. liui chloroplast
176NC_005087(AAAT)3p412119251119262 Physcomitrella patens subsp. patens chloroplast
177NC_004993(AAAT)3p41242644275 Calycanthus floridus var. glaucus chloroplast
178NC_004823(AAAT)3p4121216412175 Eimeria tenella strain Penn State apicoplast
179NC_004561(AAAT)3p4125644156452 Atropa belladonna chloroplast
180NC_004115(AAAT)3p4122594925960 Chaetosphaeridium globosum chloroplast
181NC_004115(AAAT)3p41249534964 Chaetosphaeridium globosum chloroplast
182NC_002693(AAAT)3p412119264119275 Oenothera elata subsp. hookeri plastid plastome I
183NC_002652(AAAT)3p4124434144352 Euglena longa plastid
184NC_002652(AAAT)3p4123803438045 Euglena longa plastid
185NC_002652(AAAT)3p4123572635737 Euglena longa plastid
186NC_002652(AAAT)3p4121042910440 Euglena longa plastid
187NC_001879(AAAT)3p4125679056801 Nicotiana tabacum plastid
188NC_001675(AAAT)3p4123146431475 Cyanophora paradoxa cyanelle
189NC_001666(AAAT)3p4121815718168 Zea mays chloroplast
190NC_001603(AAAT)3p4123106231073 Euglena gracilis chloroplast
191NC_001568(AAAT)3p4126601166022 Epifagus virginiana chloroplast
192NC_001568(AAAT)3p4121700917020 Epifagus virginiana chloroplast
193NC_000932(AAAT)3p4126512665137 Arabidopsis thaliana chloroplast
194NC_000932(AAAT)3p41245264537 Arabidopsis thaliana chloroplast
195NC_000925(AAAT)3p412118104118115 Porphyra purpurea chloroplast