All Repeats of Zea mays subsp. mays mitochondrion
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_007982 | (CTCTA)4 | p5 | 4498 | 4517 | 20 | Design Primer |
2 | NC_007982 | (ATTTC)3 | p5 | 5247 | 5261 | 15 | Design Primer |
3 | NC_007982 | (ACGAG)3 | p5 | 5390 | 5404 | 15 | Design Primer |
4 | NC_007982 | (ATC)4 | p3 | 12521 | 12532 | 12 | Design Primer |
5 | NC_007982 | (ATAAGG)3 | p6 | 16556 | 16573 | 18 | Design Primer |
6 | NC_007982 | (CTCTCG)3 | p6 | 18696 | 18713 | 18 | Design Primer |
7 | NC_007982 | (ATAGA)3taggtatctctgtggatagagataaagatagggatccctcgaaatatatggaaaaagtgcacttttt(TAC)4 | c | 20981 | 21074 | 94 | Design Primer |
8 | NC_007982 | (TATAG)3 | p5 | 21252 | 21266 | 15 | Design Primer |
9 | NC_007982 | (TAG)4 | p3 | 21368 | 21379 | 12 | Design Primer |
10 | NC_007982 | (TCATA)6 | p5 | 26676 | 26705 | 30 | Design Primer |
11 | NC_007982 | (GTC)4 | p3 | 27537 | 27548 | 12 | Design Primer |
12 | NC_007982 | (CT)6 | p2 | 28064 | 28075 | 12 | Design Primer |
13 | NC_007982 | (TAGC)3 | p4 | 31390 | 31401 | 12 | Design Primer |
14 | NC_007982 | (ATGAGT)3 | p6 | 34566 | 34583 | 18 | Design Primer |
15 | NC_007982 | (GGAT)3 | p4 | 43029 | 43040 | 12 | Design Primer |
16 | NC_007982 | (ACTAC)3 | p5 | 51239 | 51253 | 15 | Design Primer |
17 | NC_007982 | (AAAG)3 | p4 | 53428 | 53439 | 12 | Design Primer |
18 | NC_007982 | (CTGA)3 | p4 | 65683 | 65694 | 12 | Design Primer |
19 | NC_007982 | (TAATA)3 | p5 | 69469 | 69483 | 15 | Design Primer |
20 | NC_007982 | (AAAGT)3 | p5 | 70113 | 70127 | 15 | Design Primer |
21 | NC_007982 | (A)10 | p1 | 76866 | 76875 | 10 | Design Primer |
22 | NC_007982 | (C)10 | p1 | 78701 | 78710 | 10 | Design Primer |
23 | NC_007982 | (GCTA)3 | p4 | 80112 | 80123 | 12 | Design Primer |
24 | NC_007982 | (ATAGT)5 | p5 | 86785 | 86809 | 25 | Design Primer |
25 | NC_007982 | (AATACG)3 | p6 | 87035 | 87052 | 18 | Design Primer |
26 | NC_007982 | (TA)6 | p2 | 92602 | 92613 | 12 | Design Primer |
27 | NC_007982 | (TAAGA)4 | p5 | 93302 | 93321 | 20 | Design Primer |
28 | NC_007982 | (ATAAGA)4 | p6 | 94794 | 94817 | 24 | Design Primer |
29 | NC_007982 | (CTTT)3 | p4 | 95124 | 95135 | 12 | Design Primer |
30 | NC_007982 | (G)10 | p1 | 97030 | 97039 | 10 | Design Primer |
31 | NC_007982 | (ATAGAA)3 | p6 | 99389 | 99406 | 18 | Design Primer |
32 | NC_007982 | (CTTAA)3 | p5 | 102809 | 102823 | 15 | Design Primer |
33 | NC_007982 | (GCTC)3 | p4 | 109787 | 109798 | 12 | Design Primer |
34 | NC_007982 | (CT)6attttctttgatgcaatttagagagaaagagcagtgcgaact(A)10 | c | 112502 | 112565 | 64 | Design Primer |
35 | NC_007982 | (AAAAG)3 | p5 | 113329 | 113343 | 15 | Design Primer |
36 | NC_007982 | (CTTT)3 | p4 | 119581 | 119592 | 12 | Design Primer |
37 | NC_007982 | (TGTAG)3 | p5 | 121766 | 121780 | 15 | Design Primer |
38 | NC_007982 | (CATC)3 | p4 | 129979 | 129990 | 12 | Design Primer |
39 | NC_007982 | (TTAGAT)3 | p6 | 132492 | 132509 | 18 | Design Primer |
40 | NC_007982 | (CTATA)3 | p5 | 132816 | 132830 | 15 | Design Primer |
41 | NC_007982 | (ATAGT)3 | p5 | 132956 | 132970 | 15 | Design Primer |
42 | NC_007982 | (GATT)3 | p4 | 138337 | 138348 | 12 | Design Primer |
43 | NC_007982 | (TTTGC)3 | p5 | 146874 | 146888 | 15 | Design Primer |
44 | NC_007982 | (T)10 | p1 | 155825 | 155834 | 10 | Design Primer |
45 | NC_007982 | (A)10 | p1 | 161802 | 161811 | 10 | Design Primer |
46 | NC_007982 | (AATG)3 | p4 | 162603 | 162614 | 12 | Design Primer |
47 | NC_007982 | (CTGA)3 | p4 | 166303 | 166314 | 12 | Design Primer |
48 | NC_007982 | (TAATA)3 | p5 | 170089 | 170103 | 15 | Design Primer |
49 | NC_007982 | (AAAGT)3 | p5 | 170733 | 170747 | 15 | Design Primer |
50 | NC_007982 | (GAATGG)3 | p6 | 182063 | 182080 | 18 | Design Primer |
51 | NC_007982 | (TAAG)3 | p4 | 183647 | 183658 | 12 | Design Primer |
52 | NC_007982 | (TCTT)3 | p4 | 185570 | 185581 | 12 | Design Primer |
53 | NC_007982 | (TATT)3 | p4 | 185781 | 185792 | 12 | Design Primer |
54 | NC_007982 | (TAAGT)5 | p5 | 188773 | 188797 | 25 | Design Primer |
55 | NC_007982 | (GACT)3 | p4 | 196294 | 196305 | 12 | Design Primer |
56 | NC_007982 | (T)10 | p1 | 197340 | 197349 | 10 | Design Primer |
57 | NC_007982 | (TTTAG)5 | p5 | 204120 | 204144 | 25 | Design Primer |
58 | NC_007982 | (GAAA)3 | p4 | 207749 | 207760 | 12 | Design Primer |
59 | NC_007982 | (ACA)4 | p3 | 208916 | 208927 | 12 | Design Primer |
60 | NC_007982 | (TTC)4 | p3 | 211050 | 211061 | 12 | Design Primer |
61 | NC_007982 | (GCAA)3 | p4 | 216738 | 216749 | 12 | Design Primer |
62 | NC_007982 | (CTTA)3 | p4 | 220727 | 220738 | 12 | Design Primer |
63 | NC_007982 | (TCCTG)3 | p5 | 226729 | 226743 | 15 | Design Primer |
64 | NC_007982 | (TATAT)4 | p5 | 231945 | 231964 | 20 | Design Primer |
65 | NC_007982 | (ATT)4 | p3 | 233105 | 233116 | 12 | Design Primer |
66 | NC_007982 | (ATCAA)3 | p5 | 235669 | 235683 | 15 | Design Primer |
67 | NC_007982 | (AGA)4 | p3 | 241642 | 241653 | 12 | Design Primer |
68 | NC_007982 | (CAGT)3 | p4 | 243742 | 243753 | 12 | Design Primer |
69 | NC_007982 | (CTGT)3 | p4 | 244576 | 244587 | 12 | Design Primer |
70 | NC_007982 | (TTAGT)3 | p5 | 245050 | 245064 | 15 | Design Primer |
71 | NC_007982 | (CTCTA)4 | p5 | 248008 | 248027 | 20 | Design Primer |
72 | NC_007982 | (ATTTC)3 | p5 | 248757 | 248771 | 15 | Design Primer |
73 | NC_007982 | (ACGAG)3 | p5 | 248900 | 248914 | 15 | Design Primer |
74 | NC_007982 | (TGGC)3 | p4 | 251469 | 251480 | 12 | Design Primer |
75 | NC_007982 | (CAAT)3(CAATC)4* | c* | 259926 | 259953 | 28 | Design Primer |
76 | NC_007982 | (ACTAC)3 | p5 | 264534 | 264548 | 15 | Design Primer |
77 | NC_007982 | (TACTAG)3 | p6 | 265074 | 265091 | 18 | Design Primer |
78 | NC_007982 | (AAG)4 | p3 | 265209 | 265220 | 12 | Design Primer |
79 | NC_007982 | (TCTTTA)3 | p6 | 265891 | 265908 | 18 | Design Primer |
80 | NC_007982 | (TTCT)3 | p4 | 269755 | 269766 | 12 | Design Primer |
81 | NC_007982 | (TTGGA)3 | p5 | 271246 | 271260 | 15 | Design Primer |
82 | NC_007982 | (A)10 | p1 | 272763 | 272772 | 10 | Design Primer |
83 | NC_007982 | (ACTTAG)3 | p6 | 276287 | 276304 | 18 | Design Primer |
84 | NC_007982 | (TATAGA)3 | p6 | 277179 | 277196 | 18 | Design Primer |
85 | NC_007982 | (ACTTT)3 | p5 | 278892 | 278906 | 15 | Design Primer |
86 | NC_007982 | (GAAA)3 | p4 | 279197 | 279208 | 12 | Design Primer |
87 | NC_007982 | (TTGC)3 | p4 | 282126 | 282137 | 12 | Design Primer |
88 | NC_007982 | (TAGTAC)3 | p6 | 284075 | 284092 | 18 | Design Primer |
89 | NC_007982 | (TATTAC)4t(ATGGAA)4 | c | 285759 | 285807 | 49 | Design Primer |
90 | NC_007982 | (GTGA)3 | p4 | 288579 | 288590 | 12 | Design Primer |
91 | NC_007982 | (TAGTAC)3 | p6 | 296979 | 296996 | 18 | Design Primer |
92 | NC_007982 | (AATTC)3 | p5 | 297537 | 297551 | 15 | Design Primer |
93 | NC_007982 | (GATA)3 | p4 | 298992 | 299003 | 12 | Design Primer |
94 | NC_007982 | (AGTAT)3 | p5 | 299529 | 299543 | 15 | Design Primer |
95 | NC_007982 | (ATCAT)3 | p5 | 299765 | 299779 | 15 | Design Primer |
96 | NC_007982 | (TTTCAC)3 | p6 | 305636 | 305653 | 18 | Design Primer |
97 | NC_007982 | (GTA)4 | p3 | 307864 | 307875 | 12 | Design Primer |
98 | NC_007982 | (GGGCC)3 | p5 | 312368 | 312382 | 15 | Design Primer |
99 | NC_007982 | (ATAA)3 | p4 | 314123 | 314134 | 12 | Design Primer |
100 | NC_007982 | (GCAA)3tcagcatttcgtt(CACTTA)3 | c | 316082 | 316124 | 43 | Design Primer |
101 | NC_007982 | (ATCCT)4 | p5 | 316406 | 316425 | 20 | Design Primer |
102 | NC_007982 | (T)10 | p1 | 318433 | 318442 | 10 | Design Primer |
103 | NC_007982 | (CGGC)3 | p4 | 323062 | 323073 | 12 | Design Primer |
104 | NC_007982 | (T)10 | p1 | 325409 | 325418 | 10 | Design Primer |
105 | NC_007982 | (T)10 | p1 | 335818 | 335827 | 10 | Design Primer |
106 | NC_007982 | (TCTAT)3 | p5 | 336878 | 336892 | 15 | Design Primer |
107 | NC_007982 | (TATAG)4 | p5 | 341121 | 341140 | 20 | Design Primer |
108 | NC_007982 | (CCTGG)3 | p5 | 341852 | 341866 | 15 | Design Primer |
109 | NC_007982 | (TAAA)3 | p4 | 343390 | 343401 | 12 | Design Primer |
110 | NC_007982 | (AGT)4 | p3 | 344051 | 344062 | 12 | Design Primer |
111 | NC_007982 | (T)10 | p1 | 348910 | 348919 | 10 | Design Primer |
112 | NC_007982 | (ATAGT)4 | p5 | 352540 | 352559 | 20 | Design Primer |
113 | NC_007982 | (GCCT)3 | p4 | 354812 | 354823 | 12 | Design Primer |
114 | NC_007982 | (ATTCC)3 | p5 | 356797 | 356811 | 15 | Design Primer |
115 | NC_007982 | (TAGCTT)3 | p6 | 363038 | 363055 | 18 | Design Primer |
116 | NC_007982 | (ACT)4 | p3 | 367595 | 367606 | 12 | Design Primer |
117 | NC_007982 | (TA)6 | p2 | 370397 | 370408 | 12 | Design Primer |
118 | NC_007982 | (TATAG)3 | p5 | 371870 | 371884 | 15 | Design Primer |
119 | NC_007982 | (GTAAA)6 | p5 | 372875 | 372904 | 30 | Design Primer |
120 | NC_007982 | (TTCTGG)3 | p6 | 373230 | 373247 | 18 | Design Primer |
121 | NC_007982 | (AGAA)3 | p4 | 374462 | 374473 | 12 | Design Primer |
122 | NC_007982 | (AGA)4 | p3 | 376110 | 376121 | 12 | Design Primer |
123 | NC_007982 | (CTCCA)3 | p5 | 376390 | 376404 | 15 | Design Primer |
124 | NC_007982 | (CTA)6 | p3 | 378647 | 378664 | 18 | Design Primer |
125 | NC_007982 | (TTTG)3 | p4 | 380236 | 380247 | 12 | Design Primer |
126 | NC_007982 | (TTTC)3 | p4 | 380350 | 380361 | 12 | Design Primer |
127 | NC_007982 | (ATT)4 | p3 | 380903 | 380914 | 12 | Design Primer |
128 | NC_007982 | (TTAGT)4(ATAGT)5 | c | 381977 | 382021 | 45 | Design Primer |
129 | NC_007982 | (TCCT)3 | p4 | 382540 | 382551 | 12 | Design Primer |
130 | NC_007982 | (ATAGG)8 | p5 | 384202 | 384241 | 40 | Design Primer |
131 | NC_007982 | (AG)6 | p2 | 384593 | 384604 | 12 | Design Primer |
132 | NC_007982 | (T)10 | p1 | 387465 | 387474 | 10 | Design Primer |
133 | NC_007982 | (TATAG)7 | p5 | 388358 | 388392 | 35 | Design Primer |
134 | NC_007982 | (TTCCAT)3 | p6 | 388839 | 388856 | 18 | Design Primer |
135 | NC_007982 | (TCTT)3 | p4 | 390114 | 390125 | 12 | Design Primer |
136 | NC_007982 | (ATGGG)3 | p5 | 392184 | 392198 | 15 | Design Primer |
137 | NC_007982 | (ATGGCA)3 | p6 | 393985 | 394002 | 18 | Design Primer |
138 | NC_007982 | (ACCATA)5 | p6 | 397503 | 397532 | 30 | Design Primer |
139 | NC_007982 | (GTTAG)3 | p5 | 402112 | 402126 | 15 | Design Primer |
140 | NC_007982 | (GTAAA)3 | p5 | 409328 | 409342 | 15 | Design Primer |
141 | NC_007982 | (AAAGTA)3 | p6 | 409625 | 409642 | 18 | Design Primer |
142 | NC_007982 | (CAAG)3 | p4 | 410558 | 410569 | 12 | Design Primer |
143 | NC_007982 | (T)10 | p1 | 412031 | 412040 | 10 | Design Primer |
144 | NC_007982 | (TC)6 | p2 | 412248 | 412259 | 12 | Design Primer |
145 | NC_007982 | (CTTT)3 | p4 | 414243 | 414254 | 12 | Design Primer |
146 | NC_007982 | (GCGTA)3 | p5 | 420693 | 420707 | 15 | Design Primer |
147 | NC_007982 | (CCTTC)3cc(TTATAG)3 | c | 425142 | 425176 | 35 | Design Primer |
148 | NC_007982 | (TTC)4 | p3 | 426971 | 426982 | 12 | Design Primer |
149 | NC_007982 | (CCTGC)3 | p5 | 430126 | 430140 | 15 | Design Primer |
150 | NC_007982 | (TACTA)4 | p5 | 430327 | 430346 | 20 | Design Primer |
151 | NC_007982 | (AGCT)3 | p4 | 432821 | 432832 | 12 | Design Primer |
152 | NC_007982 | (TAG)4 | p3 | 433264 | 433275 | 12 | Design Primer |
153 | NC_007982 | (TATCTA)7 | p6 | 434321 | 434362 | 42 | Design Primer |
154 | NC_007982 | (TAAGGA)5 | p6 | 434692 | 434721 | 30 | Design Primer |
155 | NC_007982 | (GATAAA)3 | p6 | 437361 | 437378 | 18 | Design Primer |
156 | NC_007982 | (GTAGA)3 | p5 | 438090 | 438104 | 15 | Design Primer |
157 | NC_007982 | (AGGA)3 | p4 | 439851 | 439862 | 12 | Design Primer |
158 | NC_007982 | (T)10 | p1 | 440424 | 440433 | 10 | Design Primer |
159 | NC_007982 | (TTCAA)3 | p5 | 445883 | 445897 | 15 | Design Primer |
160 | NC_007982 | (CTTT)3 | p4 | 446561 | 446572 | 12 | Design Primer |
161 | NC_007982 | (TGAG)3 | p4 | 450634 | 450645 | 12 | Design Primer |
162 | NC_007982 | (TACTT)3 | p5 | 455877 | 455891 | 15 | Design Primer |
163 | NC_007982 | (ATAGT)3 | p5 | 456405 | 456419 | 15 | Design Primer |
164 | NC_007982 | (ACAG)3 | p4 | 458633 | 458644 | 12 | Design Primer |
165 | NC_007982 | (TCTA)4 | p4 | 459826 | 459841 | 16 | Design Primer |
166 | NC_007982 | (TGAG)3tccactgtttacgttacaactagcagtagcgtgtcaattctagtcagaaaaaaagctttccattgattcatgata(GTGCC)3 | c | 462915 | 463016 | 102 | Design Primer |
167 | NC_007982 | (ACCTT)3 | p5 | 464646 | 464660 | 15 | Design Primer |
168 | NC_007982 | (AAGC)3 | p4 | 466502 | 466513 | 12 | Design Primer |
169 | NC_007982 | (GAA)6 | p3 | 467533 | 467550 | 18 | Design Primer |
170 | NC_007982 | (CTATA)3 | p5 | 469731 | 469745 | 15 | Design Primer |
171 | NC_007982 | (TAAGT)3 | p5 | 472494 | 472508 | 15 | Design Primer |
172 | NC_007982 | (TCGT)3 | p4 | 474056 | 474067 | 12 | Design Primer |
173 | NC_007982 | (TGGAT)3 | p5 | 475415 | 475429 | 15 | Design Primer |
174 | NC_007982 | (TGAA)3 | p4 | 475796 | 475807 | 12 | Design Primer |
175 | NC_007982 | (CTATA)3 | p5 | 476205 | 476219 | 15 | Design Primer |
176 | NC_007982 | (T)12 | p1 | 478576 | 478587 | 12 | Design Primer |
177 | NC_007982 | (GAA)4 | p3 | 481897 | 481908 | 12 | Design Primer |
178 | NC_007982 | (TCAAA)3 | p5 | 482613 | 482627 | 15 | Design Primer |
179 | NC_007982 | (CTTTA)3 | p5 | 483545 | 483559 | 15 | Design Primer |
180 | NC_007982 | (CTC)4gttgttgccgtggagaaagaccgtattcacgtctagttgaaatagatgcaagtcctcggccgc(TACTA)5 | c | 484968 | 485067 | 100 | Design Primer |
181 | NC_007982 | (GAAAT)3 | p5 | 485526 | 485540 | 15 | Design Primer |
182 | NC_007982 | (ACTAA)3 | p5 | 487087 | 487101 | 15 | Design Primer |
183 | NC_007982 | (TACTA)4 | p5 | 487796 | 487815 | 20 | Design Primer |
184 | NC_007982 | (TTCT)3 | p4 | 494428 | 494439 | 12 | Design Primer |
185 | NC_007982 | (TGTT)3 | p4 | 496894 | 496905 | 12 | Design Primer |
186 | NC_007982 | (TAGGGT)6 | p6 | 501646 | 501681 | 36 | Design Primer |
187 | NC_007982 | (TAA)4 | p3 | 501873 | 501884 | 12 | Design Primer |
188 | NC_007982 | (TACTA)4taacgcacacgtttcattattgttgctttactat(ATATG)3 | c | 502973 | 503041 | 69 | Design Primer |
189 | NC_007982 | (ACC)4 | p3 | 504645 | 504656 | 12 | Design Primer |
190 | NC_007982 | (AAGA)3 | p4 | 504782 | 504793 | 12 | Design Primer |
191 | NC_007982 | (TTCCTT)3 | p6 | 506259 | 506276 | 18 | Design Primer |
192 | NC_007982 | (TGGT)3 | p4 | 506463 | 506474 | 12 | Design Primer |
193 | NC_007982 | (AAGTA)3 | p5 | 506990 | 507004 | 15 | Design Primer |
194 | NC_007982 | (GCCC)3 | p4 | 510671 | 510682 | 12 | Design Primer |
195 | NC_007982 | (TAGA)3 | p4 | 518350 | 518361 | 12 | Design Primer |
196 | NC_007982 | (AGAA)3 | p4 | 520488 | 520499 | 12 | Design Primer |
197 | NC_007982 | (CAGATA)3 | p6 | 521635 | 521652 | 18 | Design Primer |
198 | NC_007982 | (TACTT)3 | p5 | 524814 | 524828 | 15 | Design Primer |
199 | NC_007982 | (ATAGT)3 | p5 | 525342 | 525356 | 15 | Design Primer |
200 | NC_007982 | (ACAG)3 | p4 | 527570 | 527581 | 12 | Design Primer |
201 | NC_007982 | (TCTA)4 | p4 | 528763 | 528778 | 16 | Design Primer |
202 | NC_007982 | (TGAG)3tccactgtttacgttacaactagcagtagcgtgtcaattctagtcagaaaaaaagctttccattgattcatgata(GTGCC)3 | c | 531852 | 531953 | 102 | Design Primer |
203 | NC_007982 | (ACCTT)3 | p5 | 533583 | 533597 | 15 | Design Primer |
204 | NC_007982 | (AAGC)3 | p4 | 535439 | 535450 | 12 | Design Primer |
205 | NC_007982 | (GAA)6 | p3 | 536470 | 536487 | 18 | Design Primer |
206 | NC_007982 | (CTT)4 | p3 | 538956 | 538967 | 12 | Design Primer |
207 | NC_007982 | (ATAGTA)6 | p6 | 540932 | 540967 | 36 | Design Primer |
208 | NC_007982 | (TCGC)3 | p4 | 543584 | 543595 | 12 | Design Primer |
209 | NC_007982 | (T)10 | p1 | 548733 | 548742 | 10 | Design Primer |
210 | NC_007982 | (ATA)5tatattatatcttta(TAT)4 | c | 550196 | 550237 | 42 | Design Primer |
211 | NC_007982 | (ACTAA)3 | p5 | 550525 | 550539 | 15 | Design Primer |
212 | NC_007982 | (CTATA)3 | p5 | 551512 | 551526 | 15 | Design Primer |
213 | NC_007982 | (ATG)4 | p3 | 562726 | 562737 | 12 | Design Primer |
214 | NC_007982 | (T)12 | p1 | 566192 | 566203 | 12 | Design Primer |